Non-Coding RNA Search

Ss1.1-Pig4-TMW8034L05.3

Sequence:


               
               AATGATTCTCGACTAACTGCAGATGACACTATCCAGCGGCTGTTTGTTGAGTGTCGATTC
TACACTCTTCCTGCTGAAGAGACACCAGTGTCACTTCCAAAACCCAGGAGTGGGCAGTGG
GTCTACTATAACTTTAGCAATGTGATCTACGTGGATAGAGAAAACAACCAAGCAATACAG
AGATGACTTGGAGGCTTGAAAGAAACTGGTCCAGAGGCATCGCCTACTCCTGAGTAAATG
CTCACATGAAAGCACTTAGACGAGATTTTTGTAATTACTCTGGTGTATATAATCTATAAT
TCATGGGGAGCTGGGAGGGGGGAGGCCTGAGTTTGAAGTGTTCAAGTTTTGTGTACTTTT
TCATTTGTTTATTTTTCTAGTCCCTCCTTCCCAGGACTGCCGACCCTCAGGACTTAAGTT
CTCCACAGTGGGCAGCACCTTCTCAATAATTTATACCTACATGATAGCATGAGAAAGTCT
ATTTGCATTTTCAACATTCTTATGAAGAACTGAAATGCAATTCCCATTTTTATTTTTAAT
AAGCAAAAAAGCATAAATCTTAGAAAACCGATGAAAAAGAAATACTTTTATGTTATCCCT
AATTGTCCCCCTAAATGGAATGTCTGTGATTAGCCTCATTAAGAGTTTTATACTGTGAAG
ATTTTATTAGAAGCAATATATGAAAATTACTTGGATTAATGTGTTAATCTTCCTCTTTAA
AATGCTAATATCCATTTTATGCACATTAAAGCTCAGTATGCATTTTCAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGATTCTCGACTAACTGCAGATGACACTATCCAGCGGCTGTTTGTTGAGTGTCGATTC
TACACTCTTCCTGCTGAAGAGACACCAGTGTCACTTCCAAAACCCAGGAGTGGGCAGTGG
GTCTACTATAACTTTAGCAATGTGATCTACGTGGATAGAGAAAACAACCAAGCAATACAG
AGATGACTTGGAGGCTTGAAAGAAACTGGTCCAGAGGCATCGCCTACTCCTGAGTAAATG
CTCACATGAAAGCACTTAGACGAGATTTTTGTAATTACTCTGGTGTATATAATCTATAAT
TCATGGGGAGCTGGGAGGGGGGAGGCCTGAGTTTGAAGTGTTCAAGTTTTGTGTACTTTT
TCATTTGTTTATTTTTCTAGTCCCTCCTTCCCAGGACTGCCGACCCTCAGGACTTAAGTT
CTCCACAGTGGGCAGCACCTTCTCAATAATTTATACCTACATGATAGCATGAGAAAGTCT
ATTTGCATTTTCAACATTCTTATGAAGAACTGAAATGCAATTCCCATTTTTATTTTTAAT
AAGCAAAAAAGCATAAATCTTAGAAAACCGATGAAAAAGAAATACTTTTATGTTATCCCT
AATTGTCCCCCTAAATGGAATGTCTGTGATTAGCCTCATTAAGAGTTTTATACTGTGAAG
ATTTTATTAGAAGCAATATATGAAAATTACTTGGATTAATGTGTTAATCTTCCTCTTTAA
AATGCTAATATCCATTTTATGCACATTAAAGCTCAGTATGCATTTTCAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               640-767, - strand, RNAz p=0.82995

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               640-767, - strand, RNAz p=0.82995

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-142, gnl|bosTau2|chr18 (21272086-21271945)
               

               
               1-142, gnl|canFam2|chr2 (65043719-65043620)
               

               
               1-142, gnl|dasNov1|scaffold_137809 (2079-2178)
               

               
               1-142, gnl|echTel1|scaffold_224117 (10210-10111)
               

               
               1-142, gnl|galGal2|chr11 (4840608-4840509)
               

               
               1-142, gnl|hg17|chr16 (52210436-52210535)
               

               
               1-142, gnl|Hg17|chr16 (52210579-52210438)
               

               
               1-142, gnl|loxAfr1|scaffold_3419 (26633-26534)
               

               
               1-142, gnl|mm7|chr8 (89825375-89825474)
               

               
               1-142, gnl|Mm7|chr8 (89825518-89825377)
               

               
               1-142, gnl|monDom2|scaffold_35 (19355803-19355902)
               

               
               1-142, gnl|oryCun1|scaffold_200441 (49461-49560)
               

               
               1-142, gnl|panTro1|chr18 (46249057-46249156)
               

               
               1-142, gnl|rheMac2|chr20 (51863037-51863136)
               

               
               1-142, gnl|rn3|chr19 (16940958-16940859)
               

               
               1-142, gnl|xenTro1|scaffold_145 (1646848-1646947)
               


               
               171-767, gnl|bosTau2|chr18 (21256262-21255663)
               

               
               171-767, gnl|Hg17|chr16 (52193517-52192921)
               

               
               171-767, gnl|Mm7|chr8 (89812774-89812178)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-142, gnl|bosTau2|chr18 (21272086-21271945)
               

               
               1-142, gnl|canFam2|chr2 (65043719-65043620)
               

               
               1-142, gnl|dasNov1|scaffold_137809 (2079-2178)
               

               
               1-142, gnl|echTel1|scaffold_224117 (10210-10111)
               

               
               1-142, gnl|galGal2|chr11 (4840608-4840509)
               

               
               1-142, gnl|hg17|chr16 (52210436-52210535)
               

               
               1-142, gnl|Hg17|chr16 (52210579-52210438)
               

               
               1-142, gnl|loxAfr1|scaffold_3419 (26633-26534)
               

               
               1-142, gnl|mm7|chr8 (89825375-89825474)
               

               
               1-142, gnl|Mm7|chr8 (89825518-89825377)
               

               
               1-142, gnl|monDom2|scaffold_35 (19355803-19355902)
               

               
               1-142, gnl|oryCun1|scaffold_200441 (49461-49560)
               

               
               1-142, gnl|panTro1|chr18 (46249057-46249156)
               

               
               1-142, gnl|rheMac2|chr20 (51863037-51863136)
               

               
               1-142, gnl|rn3|chr19 (16940958-16940859)
               

               
               1-142, gnl|xenTro1|scaffold_145 (1646848-1646947)
               


               
               171-767, gnl|bosTau2|chr18 (21256262-21255663)
               

               
               171-767, gnl|Hg17|chr16 (52193517-52192921)
               

               
               171-767, gnl|Mm7|chr8 (89812774-89812178)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ski (0.146735)
               

               
               csk (0.140746)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)
               

               
               csk (0.140746)

	1-142, gnl\|bosTau2\|chr18 (21272086-21271945)
	1-142, gnl\|canFam2\|chr2 (65043719-65043620)
	1-142, gnl\|dasNov1\|scaffold_137809 (2079-2178)
	1-142, gnl\|echTel1\|scaffold_224117 (10210-10111)
	1-142, gnl\|galGal2\|chr11 (4840608-4840509)
	1-142, gnl\|hg17\|chr16 (52210436-52210535)
	1-142, gnl\|Hg17\|chr16 (52210579-52210438)
	1-142, gnl\|loxAfr1\|scaffold_3419 (26633-26534)
	1-142, gnl\|mm7\|chr8 (89825375-89825474)
	1-142, gnl\|Mm7\|chr8 (89825518-89825377)
	1-142, gnl\|monDom2\|scaffold_35 (19355803-19355902)
	1-142, gnl\|oryCun1\|scaffold_200441 (49461-49560)
	1-142, gnl\|panTro1\|chr18 (46249057-46249156)
	1-142, gnl\|rheMac2\|chr20 (51863037-51863136)
	1-142, gnl\|rn3\|chr19 (16940958-16940859)
	1-142, gnl\|xenTro1\|scaffold_145 (1646848-1646947)

	171-767, gnl\|bosTau2\|chr18 (21256262-21255663)
	171-767, gnl\|Hg17\|chr16 (52193517-52192921)
	171-767, gnl\|Mm7\|chr8 (89812774-89812178)