Non-Coding RNA Search

Ss1.1-Pig4-TMW8034L07.3

Sequence:


               
               CAGGAACAGGAACAAGCAGCAGCTGCTGCTTCTGTTTCTGCTTCTGTTTCTGCTTCTGCT
CCTGCTTCTACTTCTGCTTCTGCACAGGCCCAGAGCCAACCAGCACAAGCCTCTCCATCA
AGTGGCAGACAATCTGGGAATAGTGAACGTAAACGAAAGGAACCTCGAGAAAAAGATAAA
GAAAAAGAAAAGGAAAAAAATAGCTGTGTAATTTTGTAACAAATATTGGATTCTGTTGGA
ACCATCTATATGTCTTCAGAAACAAAACCACAGGAGGAAAGGAAGAAAAATCGATAAATA
CCGTCTGTGCCTGATTTCCTAATGGATTTTGTTCATGTTTTTCAGGGGAAAGGTTGTTAC
TTAGTTACAATCAGACTTTTTCCAAGTCACACAGTACATTCTTTATGAGTTGGAGTTTTA
TGTTACAAGTTGGAAATGCTGTGTGTTGTCATTAATGAAAAATAATGCACTTGTAGCCAA
ATAAGCAAATCACAGCAAATTTTGTGTCATAGTGACATTCATAACTCATATCAGTTAGTA
AGCTATTTTATCTTCTGTTCTAACAATGAATAGAGGTATTGATTTTGTCTGATTCCTTCC
TCTAAATATTAGCACAATAGTTTCTGAAATTAATTTTTCAATGTTAAAGTATGATCTCAT
ACATGAGAAACCAGAGGTTTAATATAGAGATTTAAAAAGAAAAAAAAAAGAGAGAGAGAG
AGACAAAGATAACAAGAATATAAATAACCCTCAGTTGTATATTGGACTAGTTCAGCCCTT
GAACAGCTTTACCTTTAGGAATGTAAATTTTAGATATATCTTGAGAACTGATTATGGAGC
TTGGATTTAATTTAGATAGAAACAATAAAGATTTGTATTTCTTTTCCATTAGCAAAAAAA
TACATAACACTAATACTCATATCTTATCAAAATTAGATCTTAATGACTTTGTAGTATTGT
AAAATTTTGAGGAATTTTGAAATCTTTAATCTAGGTTACTTGGACCACTTATTACTATTT
ATTGACAATGTGATGAGTGAGTATAAGGAGGAAACAAACCACAGTGGATGCTGGGCCTTG
TAAATATGGAGATGTAGAAAAGGAGATTGTCTACCTTTTTCTAGAATTACCTTGAACCTT
AAAATTTAAATCATGTTTATTTTCTAGAAAATTAAGTATACTTATTAATACCAACAAAAA
AGCACATTTCTGAAAGGATATTAGAGATAATCTCTGAGTCTAGTGGAAAAGCATTTTAAA
AATTTCTTTGAGGATAGATAAAAATTTGAAGGAATTTATGTAAAAAAACAATCAGATTTT
TTTTAACTTATGAGAACCAAATAAACCTATAACATCATGTAGTGTTTATAGGATTCAGAA
AGAATATTTATTGAACTTTATTATGAGGCAACACATATTTTCCTGTATTTCTGTCATTTG
GAAAACTACCCTTAATAGGCCTTTTTATATGCTTTATATTTAAAAGTTTGTTTTAGTCAT
TTTTTGATAAGACTGTTGCTGCTGCAAGTAGTTATGTGATTACATTCTAAGCCTCAGTAA
ATTTGTTTATTCAAGAGAATCTTTATCTAACCTGAGCATCCAGGTCTGGGATGACAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAACAGGAACAAGCAGCAGCTGCTGCTTCTGTTTCTGCTTCTGTTTCTGCTTCTGCT
CCTGCTTCTACTTCTGCTTCTGCACAGGCCCAGAGCCAACCAGCACAAGCCTCTCCATCA
AGTGGCAGACAATCTGGGAATAGTGAACGTAAACGAAAGGAACCTCGAGAAAAAGATAAA
GAAAAAGAAAAGGAAAAAAATAGCTGTGTAATTTTGTAACAAATATTGGATTCTGTTGGA
ACCATCTATATGTCTTCAGAAACAAAACCACAGGAGGAAAGGAAGAAAAATCGATAAATA
CCGTCTGTGCCTGATTTCCTAATGGATTTTGTTCATGTTTTTCAGGGGAAAGGTTGTTAC
TTAGTTACAATCAGACTTTTTCCAAGTCACACAGTACATTCTTTATGAGTTGGAGTTTTA
TGTTACAAGTTGGAAATGCTGTGTGTTGTCATTAATGAAAAATAATGCACTTGTAGCCAA
ATAAGCAAATCACAGCAAATTTTGTGTCATAGTGACATTCATAACTCATATCAGTTAGTA
AGCTATTTTATCTTCTGTTCTAACAATGAATAGAGGTATTGATTTTGTCTGATTCCTTCC
TCTAAATATTAGCACAATAGTTTCTGAAATTAATTTTTCAATGTTAAAGTATGATCTCAT
ACATGAGAAACCAGAGGTTTAATATAGAGATTTAAAAAGAAAAAAAAAAGAGAGAGAGAG
AGACAAAGATAACAAGAATATAAATAACCCTCAGTTGTATATTGGACTAGTTCAGCCCTT
GAACAGCTTTACCTTTAGGAATGTAAATTTTAGATATATCTTGAGAACTGATTATGGAGC
TTGGATTTAATTTAGATAGAAACAATAAAGATTTGTATTTCTTTTCCATTAGCAAAAAAA
TACATAACACTAATACTCATATCTTATCAAAATTAGATCTTAATGACTTTGTAGTATTGT
AAAATTTTGAGGAATTTTGAAATCTTTAATCTAGGTTACTTGGACCACTTATTACTATTT
ATTGACAATGTGATGAGTGAGTATAAGGAGGAAACAAACCACAGTGGATGCTGGGCCTTG
TAAATATGGAGATGTAGAAAAGGAGATTGTCTACCTTTTTCTAGAATTACCTTGAACCTT
AAAATTTAAATCATGTTTATTTTCTAGAAAATTAAGTATACTTATTAATACCAACAAAAA
AGCACATTTCTGAAAGGATATTAGAGATAATCTCTGAGTCTAGTGGAAAAGCATTTTAAA
AATTTCTTTGAGGATAGATAAAAATTTGAAGGAATTTATGTAAAAAAACAATCAGATTTT
TTTTAACTTATGAGAACCAAATAAACCTATAACATCATGTAGTGTTTATAGGATTCAGAA
AGAATATTTATTGAACTTTATTATGAGGCAACACATATTTTCCTGTATTTCTGTCATTTG
GAAAACTACCCTTAATAGGCCTTTTTATATGCTTTATATTTAAAAGTTTGTTTTAGTCAT
TTTTTGATAAGACTGTTGCTGCTGCAAGTAGTTATGTGATTACATTCTAAGCCTCAGTAA
ATTTGTTTATTCAAGAGAATCTTTATCTAACCTGAGCATCCAGGTCTGGGATGACAAAAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               91-1602, gnl|bosTau2|chr10 (36455967-36454473)
               

               
               91-1602, gnl|Hg17|chr15 (56933973-56935479)
               

               
               91-1602, gnl|Mm7|chr9 (70637239-70635841)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-1602, gnl|bosTau2|chr10 (36455967-36454473)
               

               
               91-1602, gnl|Hg17|chr15 (56933973-56935479)
               

               
               91-1602, gnl|Mm7|chr9 (70637239-70635841)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               liv (0.292569)
               

               
               cbe (0.239234)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               cbe (0.239234)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	91-1602, gnl\|bosTau2\|chr10 (36455967-36454473)
	91-1602, gnl\|Hg17\|chr15 (56933973-56935479)
	91-1602, gnl\|Mm7\|chr9 (70637239-70635841)

	liv (0.292569)
	cbe (0.239234)
	fco (0.157208)
	bfe (0.149858)
	ret (0.128733)
	sug (0.127291)
	tra (0.123092)
	pgl (0.118483)
	ecc (0.115035)
	ldo (0.0970026)