Non-Coding RNA Search

Ss1.1-Pig4-TMW8034L12.5

Sequence:


               
               GAGCTGCCGCCACTTGAGGATGTGGGGCAGCCCCCAGTGGAGGAGGCCGAACAGCCCGGG
GCCCTGGCCCGAGAGTTCCTGGCCGCCATGGAGCCTGAGCCTGAGCCCGCCCCAGCCCCA
GACGAGTGGCTGGACATCCTGGGGAATGGGCTGTTGAGGAAGAAGACGCTGGTTCCAGGC
CCACCAGGCTCAAGTCGCCCGACCAAGGGCCAGGTGGTCACTGTGCAGCTGCAGACATCA
TTGGAGAATGGCACACGGGTACAGGAGGAGCCGGAGCTGGTGTTCACCCTAGGCGACTGT
GACGTCATCCAGGCCCTGGATCTCAGTGTCCCACTCATGGATGTGGGGGAGACAGCTATG
GTCACTGCTGACTCCAAGTACTGCTATGGCCCCCAAGGCAGCAGGAGCCCATACATCCCC
CCACATGCGGCCCTGTGCCTGGAGGTGACCCTGAAGGCTGCCGTGGATGGGCCTGATCTG
GAGATGCTTACAGGGCAGGAGCGAGTGGCCCTGGCCAACCGGAAGCGGGAGTGTGGCAAT
GCTCACTACCAGCGGGCTGACTTCGTGCTGGCTGCCAACTCCTATGACCTCGCCATCAAG
GCCATCACTTCTAGTGCCAAAGTGGACATGACATTTGAGGAGGAGGAACAGCTTTTGCAG
CTGAAGGTGAAGTGTCTGAACAACTTGGCAGCCTCACAGCTGAAGCTGGACCACTACCGT
GCAGCGCTGCGCTCCTGCAGCCTTGTGCTTGAGCACCAGCCTGACAACATCAAGGCACTT
TTCCGAAAGGGCAAGGTGCTGGCCCAGCAAGGTGAGTACAGTGAGGCCATCCCCATCCTG
AGAGCAGCTCTGAAGCTGGAACCTTCCAACAAGACGATCCACGCAGAGCTCTCAAAGTTG
GTGAAGAAGCACGCAGCCCAGCGGAGCACAGAGACCGCCCTCTACCGGAAGATGCTGGGC
AACCCCAGCCGGCTGCCTGCCAAGTGTCCTGGCAAGGGTGCCTGGTCCATCCCATGGAAG
TGGCTGTTTGGGGCAACTGCTGTGGCCCTGGGGGGCGTGGCTCTCTCTGTGGTCATCGCT
GCCAGGAACTGACTGCCCATGTGGCCGCCATCCCCTCCACTCATGGTGGACCCTACCCTG
CGCTCCCTGACTCCCCCAGGCTCCCTGTCCACTGCCCTAACTGGCCTAGCCCCCTCCTCT
GGGGCGGGGACAGTGAGGTTTGGGGGTTGTGTGGCCCAGTGAGCAGGAGGGACTGAGCCC
TATAGGAGGAAAATGAGGCAGGGCCTGGGCCCCATGTCCAGCCCAGAGTGAGGGGGCCCT
CATTCTTCCAGACCCAATTCCCACCCTTACCCACACTCTCCGGGTTAGGTCTCAGTTGGG
GCCAGCCTCAGTTTCTCTTTCCCGACAGGCCTGGGGGCAGCCCTTCCCCCACCCAGTCCC
TGTCCAAGCACCAACTCTTCCTGCCCCGCCTGCTGCCCTCTCCCCAGGTCCCCCTCCCTC
CACCCCCAGCCCCAAACACAGTGAAATAAAGCCTCCCACCCGCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCTGCCGCCACTTGAGGATGTGGGGCAGCCCCCAGTGGAGGAGGCCGAACAGCCCGGG
GCCCTGGCCCGAGAGTTCCTGGCCGCCATGGAGCCTGAGCCTGAGCCCGCCCCAGCCCCA
GACGAGTGGCTGGACATCCTGGGGAATGGGCTGTTGAGGAAGAAGACGCTGGTTCCAGGC
CCACCAGGCTCAAGTCGCCCGACCAAGGGCCAGGTGGTCACTGTGCAGCTGCAGACATCA
TTGGAGAATGGCACACGGGTACAGGAGGAGCCGGAGCTGGTGTTCACCCTAGGCGACTGT
GACGTCATCCAGGCCCTGGATCTCAGTGTCCCACTCATGGATGTGGGGGAGACAGCTATG
GTCACTGCTGACTCCAAGTACTGCTATGGCCCCCAAGGCAGCAGGAGCCCATACATCCCC
CCACATGCGGCCCTGTGCCTGGAGGTGACCCTGAAGGCTGCCGTGGATGGGCCTGATCTG
GAGATGCTTACAGGGCAGGAGCGAGTGGCCCTGGCCAACCGGAAGCGGGAGTGTGGCAAT
GCTCACTACCAGCGGGCTGACTTCGTGCTGGCTGCCAACTCCTATGACCTCGCCATCAAG
GCCATCACTTCTAGTGCCAAAGTGGACATGACATTTGAGGAGGAGGAACAGCTTTTGCAG
CTGAAGGTGAAGTGTCTGAACAACTTGGCAGCCTCACAGCTGAAGCTGGACCACTACCGT
GCAGCGCTGCGCTCCTGCAGCCTTGTGCTTGAGCACCAGCCTGACAACATCAAGGCACTT
TTCCGAAAGGGCAAGGTGCTGGCCCAGCAAGGTGAGTACAGTGAGGCCATCCCCATCCTG
AGAGCAGCTCTGAAGCTGGAACCTTCCAACAAGACGATCCACGCAGAGCTCTCAAAGTTG
GTGAAGAAGCACGCAGCCCAGCGGAGCACAGAGACCGCCCTCTACCGGAAGATGCTGGGC
AACCCCAGCCGGCTGCCTGCCAAGTGTCCTGGCAAGGGTGCCTGGTCCATCCCATGGAAG
TGGCTGTTTGGGGCAACTGCTGTGGCCCTGGGGGGCGTGGCTCTCTCTGTGGTCATCGCT
GCCAGGAACTGACTGCCCATGTGGCCGCCATCCCCTCCACTCATGGTGGACCCTACCCTG
CGCTCCCTGACTCCCCCAGGCTCCCTGTCCACTGCCCTAACTGGCCTAGCCCCCTCCTCT
GGGGCGGGGACAGTGAGGTTTGGGGGTTGTGTGGCCCAGTGAGCAGGAGGGACTGAGCCC
TATAGGAGGAAAATGAGGCAGGGCCTGGGCCCCATGTCCAGCCCAGAGTGAGGGGGCCCT
CATTCTTCCAGACCCAATTCCCACCCTTACCCACACTCTCCGGGTTAGGTCTCAGTTGGG
GCCAGCCTCAGTTTCTCTTTCCCGACAGGCCTGGGGGCAGCCCTTCCCCCACCCAGTCCC
TGTCCAAGCACCAACTCTTCCTGCCCCGCCTGCTGCCCTCTCCCCAGGTCCCCCTCCCTC
CACCCCCAGCCCCAAACACAGTGAAATAAAGCCTCCCACCCGCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q53GU3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53GU3_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1109-1461, - strand, RNAz p=0.992019

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1109-1461, - strand, RNAz p=0.992019

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1567, gnl|bosTau2|chr7 (793250-794799)
               

               
               1-1567, gnl|Hg17|chr19 (18513630-18503574)
               

               
               1-1567, gnl|Mm7|chr8 (68984674-68990466)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1567, gnl|bosTau2|chr7 (793250-794799)
               

               
               1-1567, gnl|Hg17|chr19 (18513630-18503574)
               

               
               1-1567, gnl|Mm7|chr8 (68984674-68990466)

Expressed library(ies): 27 entry(ies)

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Expressed library(ies): 27 entry(ies)

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               cbr (0.639877)
               

               
               nco (0.485201)
               

               
               ece (0.45861)
               

               
               amn (0.417711)
               

               
               cty (0.41632)
               

               
               fcc (0.39557)
               

               
               ebs (0.354904)
               

               
               fty (0.351679)
               

               
               fhi (0.339155)
               

               
               hyp (0.285673)
               

               
               ese (0.253004)
               

               
               eru (0.240096)
               

               
               med (0.232504)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.639877)
               

               
               nco (0.485201)
               

               
               ece (0.45861)
               

               
               amn (0.417711)
               

               
               cty (0.41632)
               

               
               fcc (0.39557)
               

               
               ebs (0.354904)
               

               
               fty (0.351679)
               

               
               fhi (0.339155)
               

               
               hyp (0.285673)
               

               
               ese (0.253004)
               

               
               eru (0.240096)
               

               
               med (0.232504)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	1-1567, gnl\|bosTau2\|chr7 (793250-794799)
	1-1567, gnl\|Hg17\|chr19 (18513630-18503574)
	1-1567, gnl\|Mm7\|chr8 (68984674-68990466)

	cbr (0.639877)
	nco (0.485201)
	ece (0.45861)
	amn (0.417711)
	cty (0.41632)
	fcc (0.39557)
	ebs (0.354904)
	fty (0.351679)
	fhi (0.339155)
	hyp (0.285673)
	ese (0.253004)
	eru (0.240096)
	med (0.232504)
	jej (0.197844)
	nlu (0.191681)
	nep (0.183925)
	fbs (0.175346)
	mcp (0.170648)
	eye (0.170503)
	csp (0.161186)
	cag (0.151194)
	pty (0.142714)
	lnt (0.142308)
	nca (0.136874)
	nmm (0.132802)
	jca (0.11396)
	nbm (0.0993246)