Ss1.1-Pig4-TMW8034L13.5
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CAGTGGAGCCCGGCGGGCGTGGGAATCCGGGCCGGGCCAAGGCGGTCAGGAGGCAGAATG
GCAGCTGGGCCAAATGGGCTCGAGGAATGGGTGGGCAGCGCATACCTGTTTGTGGAGTCC
TCGCTGGACAAGGTGGTCTTGTCAGAGTCCTACGCTCACCAGCAGCACAAAGCAGCCGTG
TACAGGGCTCTGCGGACTGCCCTTGCAGAGAGTGGCGGGAGCCCGGAGGAGCTGCAGATG
CTCAAGATTCACCGCAGCGATCCGCAGCTGATTGTTCAATTGCGTTTCTGTGGGCGCCAG
GCCTGCAGCCGCTTCCTCCGGGCCTACCGCGAGGGGGCACTGCGCACCGCTCTGCAGGCG
TGCTTGGAGGCTGCTCTGGCCCTGAGTTCCGTGCCTTTGCAACTGGAGCTGCGCGCCAGC
GCAGAGCGGCTGGACGCCTTGCTGACAGACGAGGAACGCTGTTTGAATTTCATCTTCGCC
CAGAAGCCTGACCGGCTCCGGGATGAGGAACTCACAGAGTTGGAGGATGCGCTCAGAAAT
CTGACCTGCGGCTCAGGGGGCCAAGGGGGTGACGTGGAGGGCGCTCCAGCCACCTCTACT
GCGGAGAAGCTGCCGCCACCGCCGTCTGGCCAGACTTTTCTGTTCCAGGGTCAGCCTGTC
GTGAACCGGCCGCTGAGCCTGCAGGACCAACTGACGTTTGCGCGCTCAGTGGGCCTCAAG
TGGCGCAAGGTGGGGCGCTCCTTGCAGCGTGGTTGCCGGGCGCTGCGGGACCCGGCTCTT
GACTCACTGGCCTATGAATACGAGCGCGAAGGGCTGTACGAGCAGGCCTTTCAGCTGCTG
CGGCGCTTTGTGCAGGCCGAGGGCCGCCGAGCCACGCTGCAGCGCCTGGTAGAGGCCCTT
GAGGAGAACGAGCTCACCAGCCTGGCAGAAGACTTGCTGGGCCTGGCGAATCCCGATGGC
AGCCTGGCCTAGACTGAGTACCAGAGAAAGAGGGTGGTCAGCCAGTTGCCCAGCCAGGGT
TTGGGGCACCTGGATGACCATAGGTTCCCTTCTGCTGCTACTGCTGATCTTCTGTCCATC
CATGGGACTCTGAGATGACACTCAACCCCACTTCGCTGAGCTGCTGGAGCTGCTGGGCAG
AGGTGACTGCCCTCTCCGGGAGACGGACAAGCATCCATTATGCCTGCTGGAGGTTCTGCT
CTAAATACTATGATAGAGACAGAGTTAACTGGTGACCTGCTGCAGAAGTCTGCCTCACCC
TCTCCCACCCCAGAAGAGGGGCTTTCAGCCAGACCTTACCTCTTCATTCACCGAATGAAC
AATTATTATTCATTAATTCATTAAGGACCTGCTGTATCTTAGGCATCATCTTAAGTGTTC
CAAATATTGTGCTGAAACAAGATACACGAATCCTGCCTGCTCCCAGTTGACACTCAGTAT
GGTACTCTGAATATTAAGCATCAGTAATAAAATACTACCCACTTTTTG
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Blue-coloured subsequences are predicted RNA structures by RNAz
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CAGTGGAGCCCGGCGGGCGTGGGAATCCGGGCCGGGCCAAGGCGGTCAGGAGGCAGAATG
GCAGCTGGGCCAAATGGGCTCGAGGAATGGGTGGGCAGCGCATACCTGTTTGTGGAGTCC
TCGCTGGACAAGGTGGTCTTGTCAGAGTCCTACGCTCACCAGCAGCACAAAGCAGCCGTG
TACAGGGCTCTGCGGACTGCCCTTGCAGAGAGTGGCGGGAGCCCGGAGGAGCTGCAGATG
CTCAAGATTCACCGCAGCGATCCGCAGCTGATTGTTCAATTGCGTTTCTGTGGGCGCCAG
GCCTGCAGCCGCTTCCTCCGGGCCTACCGCGAGGGGGCACTGCGCACCGCTCTGCAGGCG
TGCTTGGAGGCTGCTCTGGCCCTGAGTTCCGTGCCTTTGCAACTGGAGCTGCGCGCCAGC
GCAGAGCGGCTGGACGCCTTGCTGACAGACGAGGAACGCTGTTTGAATTTCATCTTCGCC
CAGAAGCCTGACCGGCTCCGGGATGAGGAACTCACAGAGTTGGAGGATGCGCTCAGAAAT
CTGACCTGCGGCTCAGGGGGCCAAGGGGGTGACGTGGAGGGCGCTCCAGCCACCTCTACT
GCGGAGAAGCTGCCGCCACCGCCGTCTGGCCAGACTTTTCTGTTCCAGGGTCAGCCTGTC
GTGAACCGGCCGCTGAGCCTGCAGGACCAACTGACGTTTGCGCGCTCAGTGGGCCTCAAG
TGGCGCAAGGTGGGGCGCTCCTTGCAGCGTGGTTGCCGGGCGCTGCGGGACCCGGCTCTT
GACTCACTGGCCTATGAATACGAGCGCGAAGGGCTGTACGAGCAGGCCTTTCAGCTGCTG
CGGCGCTTTGTGCAGGCCGAGGGCCGCCGAGCCACGCTGCAGCGCCTGGTAGAGGCCCTT
GAGGAGAACGAGCTCACCAGCCTGGCAGAAGACTTGCTGGGCCTGGCGAATCCCGATGGC
AGCCTGGCCTAGACTGAGTACCAGAGAAAGAGGGTGGTCAGCCAGTTGCCCAGCCAGGGT
TTGGGGCACCTGGATGACCATAGGTTCCCTTCTGCTGCTACTGCTGATCTTCTGTCCATC
CATGGGACTCTGAGATGACACTCAACCCCACTTCGCTGAGCTGCTGGAGCTGCTGGGCAG
AGGTGACTGCCCTCTCCGGGAGACGGACAAGCATCCATTATGCCTGCTGGAGGTTCTGCT
CTAAATACTATGATAGAGACAGAGTTAACTGGTGACCTGCTGCAGAAGTCTGCCTCACCC
TCTCCCACCCCAGAAGAGGGGCTTTCAGCCAGACCTTACCTCTTCATTCACCGAATGAAC
AATTATTATTCATTAATTCATTAAGGACCTGCTGTATCTTAGGCATCATCTTAAGTGTTC
CAAATATTGTGCTGAAACAAGATACACGAATCCTGCCTGCTCCCAGTTGACACTCAGTAT
GGTACTCTGAATATTAAGCATCAGTAATAAAATACTACCCACTTTTTG
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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205-486, gnl|bosTau2|chr18 (28341561-28341280) |
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205-486, gnl|canFam2|chr5 (85217764-85217446) |
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205-486, gnl|dasNov1|scaffold_52612 (10309-10628) |
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205-486, gnl|echTel1|scaffold_196764 (403-714) |
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205-486, gnl|fr1|chrUn (298591892-298592215) |
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205-486, gnl|galGal2|chr11 (2339414-2339715) |
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205-486, gnl|hg17|chr16 (65746737-65747056) |
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205-486, gnl|Hg17|chr16 (65747062-65746781) |
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205-486, gnl|loxAfr1|scaffold_9166 (30315-30634) |
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205-486, gnl|mm7|chr8 (103858307-103858624) |
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205-486, gnl|Mm7|chr8 (103858630-103858349) |
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205-486, gnl|monDom2|scaffold_23 (19792353-19792019) |
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205-486, gnl|panTro1|chr18 (60006391-60006710) |
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205-486, gnl|rheMac2|chr20 (65455316-65455635) |
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205-486, gnl|rn3|chr19 (35079117-35079434) |
| |
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656-1488, gnl|bosTau2|chr18 (28340869-28340038) |
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656-1488, gnl|Hg17|chr16 (65746369-65745600) |
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656-1488, gnl|Mm7|chr8 (103857940-103857214) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
205-486, gnl|bosTau2|chr18 (28341561-28341280) |
|
205-486, gnl|canFam2|chr5 (85217764-85217446) |
|
205-486, gnl|dasNov1|scaffold_52612 (10309-10628) |
|
205-486, gnl|echTel1|scaffold_196764 (403-714) |
|
205-486, gnl|fr1|chrUn (298591892-298592215) |
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205-486, gnl|galGal2|chr11 (2339414-2339715) |
|
205-486, gnl|hg17|chr16 (65746737-65747056) |
|
205-486, gnl|Hg17|chr16 (65747062-65746781) |
|
205-486, gnl|loxAfr1|scaffold_9166 (30315-30634) |
|
205-486, gnl|mm7|chr8 (103858307-103858624) |
|
205-486, gnl|Mm7|chr8 (103858630-103858349) |
|
205-486, gnl|monDom2|scaffold_23 (19792353-19792019) |
|
205-486, gnl|panTro1|chr18 (60006391-60006710) |
|
205-486, gnl|rheMac2|chr20 (65455316-65455635) |
|
205-486, gnl|rn3|chr19 (35079117-35079434) |
| |
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656-1488, gnl|bosTau2|chr18 (28340869-28340038) |
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656-1488, gnl|Hg17|chr16 (65746369-65745600) |
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656-1488, gnl|Mm7|chr8 (103857940-103857214) |
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cga (0.279096) |
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cty (0.20816) |
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col (0.195008) |
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nje (0.16592) |
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csp (0.161186) |
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lnt (0.142308) |
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hlv (0.139256) |
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pla (0.133672) |
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nmm (0.132802) |
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cov (0.132153) |
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cly (0.120642) |
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med (0.116252) |
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cga (0.279096) |
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cty (0.20816) |
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col (0.195008) |
|
nje (0.16592) |
|
csp (0.161186) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
cly (0.120642) |
|
med (0.116252) |
