Non-Coding RNA Search

Ss1.1-Pig4-TMW8034L20.3

Sequence:


               
               CGAGGTTTGTGTTATCATGGTGAGGGGGTGGGAAGCCCACTCCTCTGCCAGGCTCCGAAG
CCAAAAGTCTAGAAAAGCATCCTGTCTGGCATTTTGTAGCCTTAACACCCCCCTCTCTTT
TCATTGCCTTAAAAGAAATCTTTAGCTCAGATAATGCCACACATTTTTTTCATGGTTTGG
CCCATTATTAGCTCTTTTCTTGGGCATTTCTTTGTCATATATATATGCCTATGTATATGT
CTATGTATAGACATATATATATGACAAATATATATGAAAAATTTTTTCCTCTGTCTCTTT
AAATTTTAAATATCTTGCAAACATTGCTGAGTTGGGTGTGGGGAGAGAAATAAAAGACAC
TTTCAAACTGTTACAGATGACAATGGGAGCCTCATAAAGATGCCTCTCTGTTCCCTCCCT
CCTCTCAGCTCCAAGGTCATTTAGTTATAACTGATAGAAAAAGATAGAATTTCAGGGGGT
GGCGGGGAGGGGACTCATGGAACTTTTCCTCCATGGGAAAGTTTCCCTTTTGTAAGTTGA
GGGCAAAGGGTGGGGATATTTTTTAGTTTGTGATTTTACATTTATCTGTACATACTTTTT
CAAGGTTGCTCATTTTTATAACCATGGTTTTCCTGAAATTCTTGATTCATCAGTATGAAG
GAAATGAACCAAATAAACTCTAATGATACCATAAATAACAGTACAAGTGAGTATAACTCT
GACATTCCACAAAACATTTTTGATTTCCAGGTTTGTATGATGTCATTTTTAATCCTATAC
TTGCATATGCTTTAAATTAACACATTTTTAAAGCTTTTACCCTGTTCTTTCAATTTTCAA
TCTGTTAGCCATCTTGAAGCAATATTGTCTAACATAAATTGTACTGTTGAATTTGGCTTT
ACGGGTGTAAACACTGATAGTGTATCAGTATCTGAGACCCCAAACTCTCCAAACATTGAT
GGTGCATTTTGTTCTTTAAATGAAATCTGTGCAATAAAATAACAGCCTGTCTGCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGGTTTGTGTTATCATGGTGAGGGGGTGGGAAGCCCACTCCTCTGCCAGGCTCCGAAG
CCAAAAGTCTAGAAAAGCATCCTGTCTGGCATTTTGTAGCCTTAACACCCCCCTCTCTTT
TCATTGCCTTAAAAGAAATCTTTAGCTCAGATAATGCCACACATTTTTTTCATGGTTTGG
CCCATTATTAGCTCTTTTCTTGGGCATTTCTTTGTCATATATATATGCCTATGTATATGT
CTATGTATAGACATATATATATGACAAATATATATGAAAAATTTTTTCCTCTGTCTCTTT
AAATTTTAAATATCTTGCAAACATTGCTGAGTTGGGTGTGGGGAGAGAAATAAAAGACAC
TTTCAAACTGTTACAGATGACAATGGGAGCCTCATAAAGATGCCTCTCTGTTCCCTCCCT
CCTCTCAGCTCCAAGGTCATTTAGTTATAACTGATAGAAAAAGATAGAATTTCAGGGGGT
GGCGGGGAGGGGACTCATGGAACTTTTCCTCCATGGGAAAGTTTCCCTTTTGTAAGTTGA
GGGCAAAGGGTGGGGATATTTTTTAGTTTGTGATTTTACATTTATCTGTACATACTTTTT
CAAGGTTGCTCATTTTTATAACCATGGTTTTCCTGAAATTCTTGATTCATCAGTATGAAG
GAAATGAACCAAATAAACTCTAATGATACCATAAATAACAGTACAAGTGAGTATAACTCT
GACATTCCACAAAACATTTTTGATTTCCAGGTTTGTATGATGTCATTTTTAATCCTATAC
TTGCATATGCTTTAAATTAACACATTTTTAAAGCTTTTACCCTGTTCTTTCAATTTTCAA
TCTGTTAGCCATCTTGAAGCAATATTGTCTAACATAAATTGTACTGTTGAATTTGGCTTT
ACGGGTGTAAACACTGATAGTGTATCAGTATCTGAGACCCCAAACTCTCCAAACATTGAT
GGTGCATTTTGTTCTTTAAATGAAATCTGTGCAATAAAATAACAGCCTGTCTGCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-1018, gnl|bosTau2|chr1 (62630273-62629273)
               

               
               3-1018, gnl|Hg17|chr3 (171633300-171634589)
               

               
               3-1018, gnl|Mm7|chr3 (30975367-30976331)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1018, gnl|bosTau2|chr1 (62630273-62629273)
               

               
               3-1018, gnl|Hg17|chr3 (171633300-171634589)
               

               
               3-1018, gnl|Mm7|chr3 (30975367-30976331)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               fbs (2.80554)
               

               
               fhi (1.18704)
               

               
               fco (1.10046)
               

               
               hyp (0.999857)
               

               
               cbe (0.717703)
               

               
               spc (0.680195)
               

               
               sug (0.509165)
               

               
               fcc (0.39557)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               ova (0.258264)
               

               
               tes (0.207814)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (2.80554)
               

               
               fhi (1.18704)
               

               
               fco (1.10046)
               

               
               hyp (0.999857)
               

               
               cbe (0.717703)
               

               
               spc (0.680195)
               

               
               sug (0.509165)
               

               
               fcc (0.39557)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               ova (0.258264)
               

               
               tes (0.207814)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)

	3-1018, gnl\|bosTau2\|chr1 (62630273-62629273)
	3-1018, gnl\|Hg17\|chr3 (171633300-171634589)
	3-1018, gnl\|Mm7\|chr3 (30975367-30976331)

	fbs (2.80554)
	fhi (1.18704)
	fco (1.10046)
	hyp (0.999857)
	cbe (0.717703)
	spc (0.680195)
	sug (0.509165)
	fcc (0.39557)
	fce (0.271592)
	cov (0.264306)
	ova (0.258264)
	tes (0.207814)
	nmm (0.132802)
	pgl (0.118483)