Ss1.1-Pig4-TMW8034M10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTACACAAAAAAAGTGTTAGAGAAGATGGAGTCTTCAGTATTAGTGTGGATAACACATG CTCGTTATTCAGGGGCCTTCAGAAGGAAGAAATTGTTTTGCTTACCCACGGAGATAGTGT AGACAAAGTAGCTGATGGATTCAAGGTTGTGGCACGTTCTGGGAACATTGTAGCAGGTAT AGCAAATGAATCTAAAAAATTATATGGAGTGCAGTTCCACCCTGAAGTTGGCCTTACAGA AAATGGGAAAGTAATACTGAAGAACTTCCTCTATGATATAGCTGGATGCAGTGGGACTTT CACTGTGCAGAACAGAGAACTTGAGTGTATTCGAGAGATCAAAGAGAGAGTGGGCACATC CAAAGTTTTGGTTTTACTCAGTGGTGGAGTAGATTCAACAGTTTGTACAGCTTTGTTGAA TCGTGCTTTGAACCAAGATCAAGTCATTGCTGTGCACATCGATAATGGCTTTATGAGAAA AAGAGAAAGTCAGTCTGTTGAAGAGGCCCTCAAAAAGCTTGGAATTCAAGTCAAAGTGAT AAATGCTGCTCATTCTTTCTACAATGGAACAACAACTCTACCAATATCAGATGAAGACAG AACTCCACGAAAAAGAATTAGCAAAACTTTAAATATGACTACGAGTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTACACAAAAAAAGTGTTAGAGAAGATGGAGTCTTCAGTATTAGTGTGGATAACACATG CTCGTTATTCAGGGGCCTTCAGAAGGAAGAAATTGTTTTGCTTACCCACGGAGATAGTGT AGACAAAGTAGCTGATGGATTCAAGGTTGTGGCACGTTCTGGGAACATTGTAGCAGGTAT AGCAAATGAATCTAAAAAATTATATGGAGTGCAGTTCCACCCTGAAGTTGGCCTTACAGA AAATGGGAAAGTAATACTGAAGAACTTCCTCTATGATATAGCTGGATGCAGTGGGACTTT CACTGTGCAGAACAGAGAACTTGAGTGTATTCGAGAGATCAAAGAGAGAGTGGGCACATC CAAAGTTTTGGTTTTACTCAGTGGTGGAGTAGATTCAACAGTTTGTACAGCTTTGTTGAA TCGTGCTTTGAACCAAGATCAAGTCATTGCTGTGCACATCGATAATGGCTTTATGAGAAA AAGAGAAAGTCAGTCTGTTGAAGAGGCCCTCAAAAAGCTTGGAATTCAAGTCAAAGTGAT AAATGCTGCTCATTCTTTCTACAATGGAACAACAACTCTACCAATATCAGATGAAGACAG AACTCCACGAAAAAGAATTAGCAAAACTTTAAATATGACTACGAGTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 370-488, + strand, RNAz p=0.539814 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 370-488, + strand, RNAz p=0.539814 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 65-179, gnl|bosTau2|chr1 (71453468-71453354) | |
| 65-179, gnl|Hg17|chr3 (157106643-157106757) | |
| 65-179, gnl|Mm7|chr3 (64133422-64133537) | |
| 370-545, gnl|bosTau2|chr1 (71439858-71439683) | |
| 370-545, gnl|canFam2|chr23 (52673067-52673241) | |
| 370-545, gnl|danRer3|chr18 (36237192-36237361) | |
| 370-545, gnl|dasNov1|scaffold_74069 (7022-7196) | |
| 370-545, gnl|echTel1|scaffold_285874 (46130-46294) | |
| 370-545, gnl|fr1|chrUn (242529586-242529755) | |
| 370-545, gnl|galGal2|chr9 (22391253-22391079) | |
| 370-545, gnl|hg17|chr3 (157111605-157111779) | |
| 370-545, gnl|Hg17|chr3 (157111604-157111779) | |
| 370-545, gnl|loxAfr1|scaffold_49559 (6755-6581) | |
| 370-545, gnl|mm7|chr3 (64136289-64136463) | |
| 370-545, gnl|Mm7|chr3 (64136288-64136463) | |
| 370-545, gnl|monDom2|scaffold_69 (2752528-2752358) | |
| 370-545, gnl|oryCun1|scaffold_174590 (4212-4386) | |
| 370-545, gnl|panTro1|chr2 (160256147-160256321) | |
| 370-545, gnl|rheMac2|chr2 (131749962-131749788) | |
| 370-545, gnl|rn3|chr2 (153768661-153768835) | |
| 370-545, gnl|tetNig1|chrUn_random (89592858-89593027) | |
| 370-545, gnl|xenTro1|scaffold_569 (779946-779773) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 65-179, gnl|bosTau2|chr1 (71453468-71453354) | |
| 65-179, gnl|Hg17|chr3 (157106643-157106757) | |
| 65-179, gnl|Mm7|chr3 (64133422-64133537) | |
| 370-545, gnl|bosTau2|chr1 (71439858-71439683) | |
| 370-545, gnl|canFam2|chr23 (52673067-52673241) | |
| 370-545, gnl|danRer3|chr18 (36237192-36237361) | |
| 370-545, gnl|dasNov1|scaffold_74069 (7022-7196) | |
| 370-545, gnl|echTel1|scaffold_285874 (46130-46294) | |
| 370-545, gnl|fr1|chrUn (242529586-242529755) | |
| 370-545, gnl|galGal2|chr9 (22391253-22391079) | |
| 370-545, gnl|hg17|chr3 (157111605-157111779) | |
| 370-545, gnl|Hg17|chr3 (157111604-157111779) | |
| 370-545, gnl|loxAfr1|scaffold_49559 (6755-6581) | |
| 370-545, gnl|mm7|chr3 (64136289-64136463) | |
| 370-545, gnl|Mm7|chr3 (64136288-64136463) | |
| 370-545, gnl|monDom2|scaffold_69 (2752528-2752358) | |
| 370-545, gnl|oryCun1|scaffold_174590 (4212-4386) | |
| 370-545, gnl|panTro1|chr2 (160256147-160256321) | |
| 370-545, gnl|rheMac2|chr2 (131749962-131749788) | |
| 370-545, gnl|rn3|chr2 (153768661-153768835) | |
| 370-545, gnl|tetNig1|chrUn_random (89592858-89593027) | |
| 370-545, gnl|xenTro1|scaffold_569 (779946-779773) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nep (0.183925) | |
| nco (0.161734) | |
| eru (0.120048) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| nco (0.161734) | |
| eru (0.120048) | |
| cty (0.10408) |