Non-Coding RNA Search

Ss1.1-Pig4-TMW8034M22.5

Sequence:


               
               CCAGATTTTTTTTTTTTAACCATTGCATTCTCCCCCCGCCCTGCCGGTGAAATCTCCTTA
ACCAATACACAGACTTCTCAGAAGATCTAAGTGGTCTCAGGGGCCAGGTAGAAAGCATTT
TTAAAGGCCAGTGTGAAGTCAAGTTTTACCAAGGTACTCTTCGTGTGTGTTACTAGTGCC
TGGTACATAGTAGGTGCTCAATAAATGTTATTAAATAACTGAATGGATTTCCTCTTCTGG
CAACTTTTTGAGAATTTGTGCTCCTAGTACTCAACAAGCTGCTCAAGGACTTTTCCATTT
CTGTGGGCAAACACAGACTATGGGAAGCCCTTTTGAATCGTTCAGAGTTGGAAGAAATTT
TTGCCTGTGAAAATGCTTACCTGACGTTATTGTCTTCTCCTGTTACTGTATAATACTTGT
CTCCTCCACCGGTCAACTCAGCATAGAGGACATAAATTCGGTCTTTTTATTAGGCAAACA
TATGCTATCTTACAGCTAATCATGAAACTGAATTTATCTTAGGCATTATTTTTGAAAAGC
CCCCATTTGTATTTGCCCTAATATAGCCAAGTATTGTACAGTTTTTCATTGTCATTTTAT
CTGTATGAAGTATTTGGTTTTAGTTTTTAAATAAAGTCTGTTAGGACCATGAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGATTTTTTTTTTTTAACCATTGCATTCTCCCCCCGCCCTGCCGGTGAAATCTCCTTA
ACCAATACACAGACTTCTCAGAAGATCTAAGTGGTCTCAGGGGCCAGGTAGAAAGCATTT
TTAAAGGCCAGTGTGAAGTCAAGTTTTACCAAGGTACTCTTCGTGTGTGTTACTAGTGCC
TGGTACATAGTAGGTGCTCAATAAATGTTATTAAATAACTGAATGGATTTCCTCTTCTGG
CAACTTTTTGAGAATTTGTGCTCCTAGTACTCAACAAGCTGCTCAAGGACTTTTCCATTT
CTGTGGGCAAACACAGACTATGGGAAGCCCTTTTGAATCGTTCAGAGTTGGAAGAAATTT
TTGCCTGTGAAAATGCTTACCTGACGTTATTGTCTTCTCCTGTTACTGTATAATACTTGT
CTCCTCCACCGGTCAACTCAGCATAGAGGACATAAATTCGGTCTTTTTATTAGGCAAACA
TATGCTATCTTACAGCTAATCATGAAACTGAATTTATCTTAGGCATTATTTTTGAAAAGC
CCCCATTTGTATTTGCCCTAATATAGCCAAGTATTGTACAGTTTTTCATTGTCATTTTAT
CTGTATGAAGTATTTGGTTTTAGTTTTTAAATAAAGTCTGTTAGGACCATGAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               218-365, - strand, RNAz p=0.986584

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               218-365, - strand, RNAz p=0.986584

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               24-645, gnl|bosTau2|chr15 (27768096-27767448)
               

               
               24-645, gnl|Hg17|chr11 (10485060-10485696)
               

               
               24-645, gnl|Mm7|chr7 (106727119-106727659)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-645, gnl|bosTau2|chr15 (27768096-27767448)
               

               
               24-645, gnl|Hg17|chr11 (10485060-10485696)
               

               
               24-645, gnl|Mm7|chr7 (106727119-106727659)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               spc (0.113366)

	24-645, gnl\|bosTau2\|chr15 (27768096-27767448)
	24-645, gnl\|Hg17\|chr11 (10485060-10485696)
	24-645, gnl\|Mm7\|chr7 (106727119-106727659)

	ill (0.175593)
	fbs (0.175346)
	hyp (0.142837)
	pla (0.133672)
	spc (0.113366)