Ss1.1-Pig4-TMW8034N01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGGTTTTTTCTGCCCGGCGCCCGCGCCCTTCGCTGCGCGACCCGCGTTCCGCGTCCCGC ATCTCACGCAGCTGTCCCTCCTGCTCGCACCTCGTTGGGAGGCTGCTGACTTGGACCCCT GTGAGCCGGAGCGTGTGGGCCATGGATTCTAAGGTCAGCAACGGTTCCAGCCTCCAGGAC GAGCGCATCACAAACCTACTGGTGTTTGGCTTCCTCCAAAGCTGCCCCCATGCCAGTTTC CACAAGGAGCTGGAGGTGCTGGGCCACGAGCTGCCTGTGCACACTTCGGGCAGTGACGAG CTGCAGACAGACGGCAATCGATGCAGCTACTTCATGGAGGACGCGGCGGAGACAGATTCT GAGAGCCAGGAGGCAGTCATTCGGGACATTGCCAGGCATCTCGCCCGAATAGGGGACAGG ATGGAGTATGGCATCCGCCCAGGGCTGGTGGATAGCCTGGCCGCACAGTTCAGGAACCAG AGCCTGTCGGAGGAGGACAGACGGCAGGGCCTGGCTGCTGTGCTGCAGCAGCTCGTGCAC TCCTACCCTGCAGACATGGGCCAGGAGAAGACCCTGCTTGTGCTGACTATGCTCCTGGCC AGAAAGGTGGCTGAACACTCGCCGGCCTTGCTCCGGGATGTCTTTCACACAACGGTGAAC TTCATCAACCAGAACCTCCTCACCTACTTGCGCAACTTAGTCCAAAGTGAGATGGACTGA ATGGACAACTCGGCAAAAGCACGACTGGTTCAAACTTGAGATTCTGACCTGTAGCCGACT CCTTGGAGATGGAGCCACAGCAGCTCAGAGGCAACGGGCATGAGCTGATGGCTAGTTAAG GACCACTCAGGAATCTGCATTAACGGATGTGAATGGAAACATTCCCCTGCACATATGTGA AGATCTCCACCATCTCCTCAGTCCTTCCACACACCGTGCCTTTATCTAGTGTCAGCTGGA AAGGTCTCCGCCTGAAAATCAGATCTGAAAGCAGATTGTAGGAGTTCCTGCTGTACCACA GCAGGGTAAGGATCCAGTGGCACCAGTTTGATACCTGGCCTGGTGCAGTGGGTTAAAGGA TCCAGCATTGCTGCAGCTGTAGTGTAGGTTGCAGCAGCGGCTCAGATTGGATCCCTGGCC CAGGAACATCCCAAAAAATAAATAATAATAAAATATTGTAGGTAAAAGAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGGTTTTTTCTGCCCGGCGCCCGCGCCCTTCGCTGCGCGACCCGCGTTCCGCGTCCCGC ATCTCACGCAGCTGTCCCTCCTGCTCGCACCTCGTTGGGAGGCTGCTGACTTGGACCCCT GTGAGCCGGAGCGTGTGGGCCATGGATTCTAAGGTCAGCAACGGTTCCAGCCTCCAGGAC GAGCGCATCACAAACCTACTGGTGTTTGGCTTCCTCCAAAGCTGCCCCCATGCCAGTTTC CACAAGGAGCTGGAGGTGCTGGGCCACGAGCTGCCTGTGCACACTTCGGGCAGTGACGAG CTGCAGACAGACGGCAATCGATGCAGCTACTTCATGGAGGACGCGGCGGAGACAGATTCT GAGAGCCAGGAGGCAGTCATTCGGGACATTGCCAGGCATCTCGCCCGAATAGGGGACAGG ATGGAGTATGGCATCCGCCCAGGGCTGGTGGATAGCCTGGCCGCACAGTTCAGGAACCAG AGCCTGTCGGAGGAGGACAGACGGCAGGGCCTGGCTGCTGTGCTGCAGCAGCTCGTGCAC TCCTACCCTGCAGACATGGGCCAGGAGAAGACCCTGCTTGTGCTGACTATGCTCCTGGCC AGAAAGGTGGCTGAACACTCGCCGGCCTTGCTCCGGGATGTCTTTCACACAACGGTGAAC TTCATCAACCAGAACCTCCTCACCTACTTGCGCAACTTAGTCCAAAGTGAGATGGACTGA ATGGACAACTCGGCAAAAGCACGACTGGTTCAAACTTGAGATTCTGACCTGTAGCCGACT CCTTGGAGATGGAGCCACAGCAGCTCAGAGGCAACGGGCATGAGCTGATGGCTAGTTAAG GACCACTCAGGAATCTGCATTAACGGATGTGAATGGAAACATTCCCCTGCACATATGTGA AGATCTCCACCATCTCCTCAGTCCTTCCACACACCGTGCCTTTATCTAGTGTCAGCTGGA AAGGTCTCCGCCTGAAAATCAGATCTGAAAGCAGATTGTAGGAGTTCCTGCTGTACCACA GCAGGGTAAGGATCCAGTGGCACCAGTTTGATACCTGGCCTGGTGCAGTGGGTTAAAGGA TCCAGCATTGCTGCAGCTGTAGTGTAGGTTGCAGCAGCGGCTCAGATTGGATCCCTGGCC CAGGAACATCCCAAAAAATAAATAATAATAAAATATTGTAGGTAAAAGAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 152-355, gnl|bosTau2|chr5 (67796645-67796851) | |
| 152-355, gnl|canFam2|chr27 (48385167-48385341) | |
| 152-355, gnl|dasNov1|scaffold_270145 (426-252) | |
| 152-355, gnl|echTel1|scaffold_240244 (1035-870) | |
| 152-355, gnl|hg17|chr22 (16601108-16601279) | |
| 152-355, gnl|Hg17|chr22 (16601335-16601123) | |
| 152-355, gnl|loxAfr1|scaffold_4358 (48906-49089) | |
| 152-355, gnl|mm7|chr6 (120925443-120925613) | |
| 152-355, gnl|Mm7|chr6 (120925674-120925457) | |
| 152-355, gnl|oryCun1|scaffold_200474 (19479-19670) | |
| 152-355, gnl|panTro1|chr23 (16472785-16472956) | |
| 152-355, gnl|rheMac2|chr10 (62443669-62443840) | |
| 152-355, gnl|rn3|chr4 (157548255-157548428) | |
| 494-709, gnl|bosTau2|chr5 (67798610-67798825) | |
| 494-709, gnl|canFam2|chr27 (48379258-48379485) | |
| 494-709, gnl|dasNov1|scaffold_29301 (39904-39675) | |
| 494-709, gnl|galGal2|chr1 (58496020-58496249) | |
| 494-709, gnl|hg17|chr22 (16595330-16595557) | |
| 494-709, gnl|Hg17|chr22 (16595551-16595336) | |
| 494-709, gnl|loxAfr1|scaffold_4358 (43702-43929) | |
| 494-709, gnl|mm7|chr6 (120920910-120921145) | |
| 494-709, gnl|Mm7|chr6 (120921134-120920919) | |
| 494-709, gnl|monDom2|scaffold_31 (27621580-27621811) | |
| 494-709, gnl|oryCun1|scaffold_200474 (14800-15025) | |
| 494-709, gnl|panTro1|chr23 (16466999-16467226) | |
| 494-709, gnl|rheMac2|chr10 (62437020-62437247) | |
| 494-709, gnl|rn3|chr4 (157542803-157543035) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 152-355, gnl|bosTau2|chr5 (67796645-67796851) | |
| 152-355, gnl|canFam2|chr27 (48385167-48385341) | |
| 152-355, gnl|dasNov1|scaffold_270145 (426-252) | |
| 152-355, gnl|echTel1|scaffold_240244 (1035-870) | |
| 152-355, gnl|hg17|chr22 (16601108-16601279) | |
| 152-355, gnl|Hg17|chr22 (16601335-16601123) | |
| 152-355, gnl|loxAfr1|scaffold_4358 (48906-49089) | |
| 152-355, gnl|mm7|chr6 (120925443-120925613) | |
| 152-355, gnl|Mm7|chr6 (120925674-120925457) | |
| 152-355, gnl|oryCun1|scaffold_200474 (19479-19670) | |
| 152-355, gnl|panTro1|chr23 (16472785-16472956) | |
| 152-355, gnl|rheMac2|chr10 (62443669-62443840) | |
| 152-355, gnl|rn3|chr4 (157548255-157548428) | |
| 494-709, gnl|bosTau2|chr5 (67798610-67798825) | |
| 494-709, gnl|canFam2|chr27 (48379258-48379485) | |
| 494-709, gnl|dasNov1|scaffold_29301 (39904-39675) | |
| 494-709, gnl|galGal2|chr1 (58496020-58496249) | |
| 494-709, gnl|hg17|chr22 (16595330-16595557) | |
| 494-709, gnl|Hg17|chr22 (16595551-16595336) | |
| 494-709, gnl|loxAfr1|scaffold_4358 (43702-43929) | |
| 494-709, gnl|mm7|chr6 (120920910-120921145) | |
| 494-709, gnl|Mm7|chr6 (120921134-120920919) | |
| 494-709, gnl|monDom2|scaffold_31 (27621580-27621811) | |
| 494-709, gnl|oryCun1|scaffold_200474 (14800-15025) | |
| 494-709, gnl|panTro1|chr23 (16466999-16467226) | |
| 494-709, gnl|rheMac2|chr10 (62437020-62437247) | |
| 494-709, gnl|rn3|chr4 (157542803-157543035) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| pty (0.285429) | |
| col (0.195008) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ese (0.126502) | |
| ecc (0.115035) | |
| cbl (0.114797) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.285429) | |
| col (0.195008) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ese (0.126502) | |
| ecc (0.115035) | |
| cbl (0.114797) |