Non-Coding RNA Search

Ss1.1-Pig4-TMW8034N04.3

Sequence:


               
               GATATTAGGAAACGGAATTTTCTTTTGCAGAGAGGAGAGGCTGGCACGTCACTTTTTAAA
AAGGGCTTCTCATCATCCTGGAAATGTATACATTAAGTAAGCTGTTTGGTGTTGCAAATG
TGCTCGTTTCTTTTTCCGATGATGTGGGTTACGTTCTGTGTTCTTCACAGCCATGTGAGA
GGGCTCTCTCTCTCTCCCACCCCCTGGGCTGTCTGGTGCCTCTGATACAAACACGCTGAC
ACAGGCATGTGTGTCCTCCGCGTCGAAGTCAACGAGTGTGGATGCCATCCGAAACACTAG
TCTGTGCTCAATCATAACCAAAAATGATCCAATACTGTTCTTACTAAAACAGCACCAAGA
CCTGAAGCCATGTTCCCTTGGAGTCAACTGACTCACTTCTTAAGCCCAGTCAATGAGCAA
AACCCCTTTAAAGCATTTGCAAACTTAGTCTTAGGTTGCCTTTCTGGCACAAATTTTTAT
TAACCTCTTGGATCTTGACTATATTATGTAATTGGAGGTGAAAGTAGGGTTGGGGTGGTG
ACATGGCTCCCAAACACGTCTCTCTACAAGGGGACAGTCCCCCAGCTCCCTGACGATGCC
CACCTCCCTCCCAGGTGCTGCTGGTGTGAGCCAGGCTGGGGGTGAGGTGGAGGGGCAGCG
GGAACAACACCACATCCTCGAGAGAAAGTCCAAAGATGAGACAGTGGGCTAGTGACCTTA
TTTTACAAATCAGGCCACCAAGCAAACTAGAACATCCCTAGCGGGTTGGCCCGGCCACCG
TTGGGAGAAAGAAACCTGAGGAAAGTGAATATCCAACCGGACATTGAGATACCTGGATTT
TTCTCTAGTTTTGAGAGTGTGCTGAGTTCCTAACTGGGCAGGATCACCAGCACCCAGCAG
GGGTATGGGTGGGTAGGGGGCAGCCAAAGAACAATTCTGCCATAGAACAAAATAGTTAGG
GCATTTGTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATATTAGGAAACGGAATTTTCTTTTGCAGAGAGGAGAGGCTGGCACGTCACTTTTTAAA
AAGGGCTTCTCATCATCCTGGAAATGTATACATTAAGTAAGCTGTTTGGTGTTGCAAATG
TGCTCGTTTCTTTTTCCGATGATGTGGGTTACGTTCTGTGTTCTTCACAGCCATGTGAGA
GGGCTCTCTCTCTCTCCCACCCCCTGGGCTGTCTGGTGCCTCTGATACAAACACGCTGAC
ACAGGCATGTGTGTCCTCCGCGTCGAAGTCAACGAGTGTGGATGCCATCCGAAACACTAG
TCTGTGCTCAATCATAACCAAAAATGATCCAATACTGTTCTTACTAAAACAGCACCAAGA
CCTGAAGCCATGTTCCCTTGGAGTCAACTGACTCACTTCTTAAGCCCAGTCAATGAGCAA
AACCCCTTTAAAGCATTTGCAAACTTAGTCTTAGGTTGCCTTTCTGGCACAAATTTTTAT
TAACCTCTTGGATCTTGACTATATTATGTAATTGGAGGTGAAAGTAGGGTTGGGGTGGTG
ACATGGCTCCCAAACACGTCTCTCTACAAGGGGACAGTCCCCCAGCTCCCTGACGATGCC
CACCTCCCTCCCAGGTGCTGCTGGTGTGAGCCAGGCTGGGGGTGAGGTGGAGGGGCAGCG
GGAACAACACCACATCCTCGAGAGAAAGTCCAAAGATGAGACAGTGGGCTAGTGACCTTA
TTTTACAAATCAGGCCACCAAGCAAACTAGAACATCCCTAGCGGGTTGGCCCGGCCACCG
TTGGGAGAAAGAAACCTGAGGAAAGTGAATATCCAACCGGACATTGAGATACCTGGATTT
TTCTCTAGTTTTGAGAGTGTGCTGAGTTCCTAACTGGGCAGGATCACCAGCACCCAGCAG
GGGTATGGGTGGGTAGGGGGCAGCCAAAGAACAATTCTGCCATAGAACAAAATAGTTAGG
GCATTTGTTTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               685-786, - strand, RNAz p=0.941088

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               685-786, - strand, RNAz p=0.941088

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               746-892, - strand, RNAmicro p=0.976879

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               746-892, - strand, RNAmicro p=0.976879

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-957, gnl|bosTau2|chr1 (82197460-82196500)
               

               
               1-957, gnl|Hg17|chr3 (139604563-139605538)
               

               
               1-957, gnl|Mm7|chr9 (99029907-99029008)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-957, gnl|bosTau2|chr1 (82197460-82196500)
               

               
               1-957, gnl|Hg17|chr3 (139604563-139605538)
               

               
               1-957, gnl|Mm7|chr9 (99029907-99029008)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               cmu (0.186393)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               cmu (0.186393)

	1-957, gnl\|bosTau2\|chr1 (82197460-82196500)
	1-957, gnl\|Hg17\|chr3 (139604563-139605538)
	1-957, gnl\|Mm7\|chr9 (99029907-99029008)