Ss1.1-Pig4-TMW8034N06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGCCACCAAGTGCATGGGGCGCAGCACTTCCCCTTATTGTGGGAAGTAAGGAGACTGC CCTTCTCCTTTTCTTTGGCTTGTCCTGGGGACCTTTGACTTGGGAGCAGTCGCCGTCTCC CGTCTGCTGTGCGCTCCGAGCCGGGAAAGTCCATCAGCCTGATAATGGAGGAGAACCATG ACTCCACGGAGAACCCCCAGCAAAGCCAAGGGCAAAACAAGGCCATGAAGTGTGGGTGGC TGAGGAAGCAAGGAGGCTTTGTCAAGACCTGGCATACCCGTTGGTTTGTGCTCAAGGGAG ACCAGCTCTACTATTTCAAAGATGAAGATGAAACCAAGCCCTTGGGTACTATTTTTCTGC CTGGAAATAGAGTCCTTGAACATCCCTGCAATGAAGAGAGCCCAGGGAAGTTCCTTTTTG AAGTAGTTCCAGGAGGCAATCGGGATCGAATGACGGCAAATCATGAGAGCTACCTCCTTA TGGCGAGCACCCAGAATGATATGGAAGACTGGGTCAAGTCCATCCGCCGAGTCATATGGG GACCATTTGGAGGAGGCATTTTCGGACAGAAGCTGGAGGATACTGTCCGTTATGAGAAGA GATACGGAAACCGCCTGGCTCCAATGTTGGTGGAACAGTGCGTGGACTTTATCCGACAAA GGGGGCTGAAGGAAGAGGGCCTCTTCCGACTGCCAGGCCAGGCTAATCTTGTCAAGGAGC TGCAGGATGCCTTTGACTGTGGGGAGAAGCCATCATTTGACAGCAACACGGATGTACACA CAGTGGCATCACTTCTTAAACTGTATCTCCGAGAACTCCCGGAACCCGTCATTCCTTATG CGAAGTATGAAGATTTTTTGTCCTGTGCCAAACTGCTCAGCAAAGAAGAGGAAGCTGGTG TGAAGGAATTAGCAAAGCAGGTGAAGAGTTTGCCGGCGGTCAATTACAACCTCCTCAAGT ATATCTGCAGGTTCTTGGATGAAGTACAGTCCTATTCAGGAATTAACAAAATGAGTGTGC AGAACTTGGCCACTGTCTTTGGCCCTAATATCCTGCGCCCCAAAGTGGAAGATCCTTTGA CTATTATGGAGGGCACTGTGGTGGTCCAACAGTTGATGTCAGTGATGATTAGCAAGCATG ATCACCTCTTCCCCAAAGACGCAGAGCTGCAAAGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGCCACCAAGTGCATGGGGCGCAGCACTTCCCCTTATTGTGGGAAGTAAGGAGACTGC CCTTCTCCTTTTCTTTGGCTTGTCCTGGGGACCTTTGACTTGGGAGCAGTCGCCGTCTCC CGTCTGCTGTGCGCTCCGAGCCGGGAAAGTCCATCAGCCTGATAATGGAGGAGAACCATG ACTCCACGGAGAACCCCCAGCAAAGCCAAGGGCAAAACAAGGCCATGAAGTGTGGGTGGC TGAGGAAGCAAGGAGGCTTTGTCAAGACCTGGCATACCCGTTGGTTTGTGCTCAAGGGAG ACCAGCTCTACTATTTCAAAGATGAAGATGAAACCAAGCCCTTGGGTACTATTTTTCTGC CTGGAAATAGAGTCCTTGAACATCCCTGCAATGAAGAGAGCCCAGGGAAGTTCCTTTTTG AAGTAGTTCCAGGAGGCAATCGGGATCGAATGACGGCAAATCATGAGAGCTACCTCCTTA TGGCGAGCACCCAGAATGATATGGAAGACTGGGTCAAGTCCATCCGCCGAGTCATATGGG GACCATTTGGAGGAGGCATTTTCGGACAGAAGCTGGAGGATACTGTCCGTTATGAGAAGA GATACGGAAACCGCCTGGCTCCAATGTTGGTGGAACAGTGCGTGGACTTTATCCGACAAA GGGGGCTGAAGGAAGAGGGCCTCTTCCGACTGCCAGGCCAGGCTAATCTTGTCAAGGAGC TGCAGGATGCCTTTGACTGTGGGGAGAAGCCATCATTTGACAGCAACACGGATGTACACA CAGTGGCATCACTTCTTAAACTGTATCTCCGAGAACTCCCGGAACCCGTCATTCCTTATG CGAAGTATGAAGATTTTTTGTCCTGTGCCAAACTGCTCAGCAAAGAAGAGGAAGCTGGTG TGAAGGAATTAGCAAAGCAGGTGAAGAGTTTGCCGGCGGTCAATTACAACCTCCTCAAGT ATATCTGCAGGTTCTTGGATGAAGTACAGTCCTATTCAGGAATTAACAAAATGAGTGTGC AGAACTTGGCCACTGTCTTTGGCCCTAATATCCTGCGCCCCAAAGTGGAAGATCCTTTGA CTATTATGGAGGGCACTGTGGTGGTCCAACAGTTGATGTCAGTGATGATTAGCAAGCATG ATCACCTCTTCCCCAAAGACGCAGAGCTGCAAAGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 144-262, + strand, RNAz p=0.749104 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 144-262, + strand, RNAz p=0.749104 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC047918, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 144-345, gnl|bosTau2|chr6 (57036014-57035813) | |
| 144-345, gnl|Hg17|chr4 (86848853-86849054) | |
| 144-345, gnl|Mm7|chr5 (101740488-101740683) | |
| 554-763, gnl|bosTau2|chr11 (47582640-47582849) | |
| 554-763, gnl|canFam2|chr28 (3429059-3428838) | |
| 554-763, gnl|danRer3|chr5 (12096919-12097143) | |
| 554-763, gnl|dasNov1|scaffold_283928 (1034-1255) | |
| 554-763, gnl|echTel1|scaffold_270273 (375-154) | |
| 554-763, gnl|fr1|chrUn (108058528-108058752) | |
| 554-763, gnl|galGal2|chr22 (296167-295948) | |
| 554-763, gnl|hg17|chr2 (68946045-68946266) | |
| 554-763, gnl|Hg17|chr2 (68946054-68946263) | |
| 554-763, gnl|loxAfr1|scaffold_15297 (58998-59219) | |
| 554-763, gnl|mm7|chr6 (87551456-87551235) | |
| 554-763, gnl|Mm7|chr6 (87551445-87551236) | |
| 554-763, gnl|monDom2|scaffold_1 (95346371-95346592) | |
| 554-763, gnl|oryCun1|scaffold_203292 (15795-16016) | |
| 554-763, gnl|panTro1|chr12 (71180283-71180504) | |
| 554-763, gnl|rheMac2|chr13 (69034050-69034271) | |
| 554-763, gnl|rn3|chr4 (121881201-121880980) | |
| 554-763, gnl|tetNig1|chr12 (11388933-11389157) | |
| 554-763, gnl|xenTro1|scaffold_110 (898481-898699) | |
| 966-1104, gnl|bosTau2|chr28 (34885741-34885880) | |
| 966-1104, gnl|Hg17|chr10 (49331479-49331342) | |
| 966-1104, gnl|Mm7|chr14 (30794153-30794291) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 144-345, gnl|bosTau2|chr6 (57036014-57035813) | |
| 144-345, gnl|Hg17|chr4 (86848853-86849054) | |
| 144-345, gnl|Mm7|chr5 (101740488-101740683) | |
| 554-763, gnl|bosTau2|chr11 (47582640-47582849) | |
| 554-763, gnl|canFam2|chr28 (3429059-3428838) | |
| 554-763, gnl|danRer3|chr5 (12096919-12097143) | |
| 554-763, gnl|dasNov1|scaffold_283928 (1034-1255) | |
| 554-763, gnl|echTel1|scaffold_270273 (375-154) | |
| 554-763, gnl|fr1|chrUn (108058528-108058752) | |
| 554-763, gnl|galGal2|chr22 (296167-295948) | |
| 554-763, gnl|hg17|chr2 (68946045-68946266) | |
| 554-763, gnl|Hg17|chr2 (68946054-68946263) | |
| 554-763, gnl|loxAfr1|scaffold_15297 (58998-59219) | |
| 554-763, gnl|mm7|chr6 (87551456-87551235) | |
| 554-763, gnl|Mm7|chr6 (87551445-87551236) | |
| 554-763, gnl|monDom2|scaffold_1 (95346371-95346592) | |
| 554-763, gnl|oryCun1|scaffold_203292 (15795-16016) | |
| 554-763, gnl|panTro1|chr12 (71180283-71180504) | |
| 554-763, gnl|rheMac2|chr13 (69034050-69034271) | |
| 554-763, gnl|rn3|chr4 (121881201-121880980) | |
| 554-763, gnl|tetNig1|chr12 (11388933-11389157) | |
| 554-763, gnl|xenTro1|scaffold_110 (898481-898699) | |
| 966-1104, gnl|bosTau2|chr28 (34885741-34885880) | |
| 966-1104, gnl|Hg17|chr10 (49331479-49331342) | |
| 966-1104, gnl|Mm7|chr14 (30794153-30794291) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |