Non-Coding RNA Search

Ss1.1-Pig4-TMW8034N11.3

Sequence:


               
               ACTTGATTGTTACCAGATATGCATATTTAAATCCCTTCTCCCCACGATGCCTCTGAAGGT
GACTTTGTAATTTACAAAAGGATTTAGGAAAATAAACCTAAAGGCAAATTTGCAGTTCAG
AGGGCAAATAGAGGCTGCCTATTCATTGTCTGTGTCCCCCACTCACCAATACCTAACCTG
CCCCCACACCCCTGACCCAGGGAGGACAGAAACCTTGTTTTCTTCAAGCTCACTGAATAG
TTTCAGACAGAGGGAAAATATATGCTTTAAAATGTATTTACTTGTTACTGGGAGTACCCA
GAATTATCAGAAACAAATGCAAAAAAAGCTTAAGCAGCTTTTTAATAACCTTTTTTTTTT
CTTTTTGCCAAAATAATCAATGCCTTTAGCAGCAGAGATTCAAATCCTATTGTGAACAAG
CTATATTTTCACCATTTTACAATGGAGACTCTTCACAAGTACGGGCTATTAAGTTTGCAC
TCAACTATGCCAAAAACAAGCTCAAAGCACTCTACTCTCAGACGCGCTGTATTACGTCTC
ACTTAAGATTTAAAAATATAAAGGTATCCAAACTGCTGTCTTAATGTAACTATTTCTCCT
TCCAGTGTTGGTTAGGGAGTTCAGTTTTCTCTCTTAAAAACACTCACTGTACAACTGAGA
GCAGCTGTCATTATTTCTGGCAAAACGTGTTTACTTATGCAACAAGCTGTGTATTTGTGT
GTGGATGGACGTAAAATGTGAATGCCTCGAAGTGTACATGTAGTGGCGTGGCGTTCTGTC
TAGAGGATCAGACTGAATGTTTTAAATTTGCCCGTTTACGGACACAGGCTGTTTACAAAC
TGCTGGCTGGAAAGTCTAATTTTCACGTGGCCACTTTTCAGTTCTTCGCCGTTGAGCACC
CGTCCTGCGTCGGAGGCGATGAGATGTGGTGGTGGACTTAGAAACTGGAGAGTTAGGCAT
ACTCCCTCCTGGCTTTGTGTGAATAGCTTGCTCACTTCACTGGCCTCTGAAACGTGTGTT
CTCTGTAGTAAACTGTCCATGTGTTCGTGATAACAGTGCTTGTCAACCACGACCAGCCTC
GAGTTCCTTCCCAGTTGTGTACCTGGCACAGTCAGAAACGATGAAGGATGTGCCCGTTTG
CAGCGGCACACACCCAGAGAGCTGACGTCCTGGACCGTGACTGTGCCTGTTTCCCCTTTG
TTTATTTCTGTAATCCCTATAGAACGACCTGTAATAAAATAGTATACTGGTCTGTGCATT
AAAGGGTTGGTTGTAAAGTTACAGTATTCCAAAGGTTGAAGTTCTGCTGTTTTGTTACAA
TGCCTGATATATATCTTGAATAAAGTCTTAACATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTGATTGTTACCAGATATGCATATTTAAATCCCTTCTCCCCACGATGCCTCTGAAGGT
GACTTTGTAATTTACAAAAGGATTTAGGAAAATAAACCTAAAGGCAAATTTGCAGTTCAG
AGGGCAAATAGAGGCTGCCTATTCATTGTCTGTGTCCCCCACTCACCAATACCTAACCTG
CCCCCACACCCCTGACCCAGGGAGGACAGAAACCTTGTTTTCTTCAAGCTCACTGAATAG
TTTCAGACAGAGGGAAAATATATGCTTTAAAATGTATTTACTTGTTACTGGGAGTACCCA
GAATTATCAGAAACAAATGCAAAAAAAGCTTAAGCAGCTTTTTAATAACCTTTTTTTTTT
CTTTTTGCCAAAATAATCAATGCCTTTAGCAGCAGAGATTCAAATCCTATTGTGAACAAG
CTATATTTTCACCATTTTACAATGGAGACTCTTCACAAGTACGGGCTATTAAGTTTGCAC
TCAACTATGCCAAAAACAAGCTCAAAGCACTCTACTCTCAGACGCGCTGTATTACGTCTC
ACTTAAGATTTAAAAATATAAAGGTATCCAAACTGCTGTCTTAATGTAACTATTTCTCCT
TCCAGTGTTGGTTAGGGAGTTCAGTTTTCTCTCTTAAAAACACTCACTGTACAACTGAGA
GCAGCTGTCATTATTTCTGGCAAAACGTGTTTACTTATGCAACAAGCTGTGTATTTGTGT
GTGGATGGACGTAAAATGTGAATGCCTCGAAGTGTACATGTAGTGGCGTGGCGTTCTGTC
TAGAGGATCAGACTGAATGTTTTAAATTTGCCCGTTTACGGACACAGGCTGTTTACAAAC
TGCTGGCTGGAAAGTCTAATTTTCACGTGGCCACTTTTCAGTTCTTCGCCGTTGAGCACC
CGTCCTGCGTCGGAGGCGATGAGATGTGGTGGTGGACTTAGAAACTGGAGAGTTAGGCAT
ACTCCCTCCTGGCTTTGTGTGAATAGCTTGCTCACTTCACTGGCCTCTGAAACGTGTGTT
CTCTGTAGTAAACTGTCCATGTGTTCGTGATAACAGTGCTTGTCAACCACGACCAGCCTC
GAGTTCCTTCCCAGTTGTGTACCTGGCACAGTCAGAAACGATGAAGGATGTGCCCGTTTG
CAGCGGCACACACCCAGAGAGCTGACGTCCTGGACCGTGACTGTGCCTGTTTCCCCTTTG
TTTATTTCTGTAATCCCTATAGAACGACCTGTAATAAAATAGTATACTGGTCTGTGCATT
AAAGGGTTGGTTGTAAAGTTACAGTATTCCAAAGGTTGAAGTTCTGCTGTTTTGTTACAA
TGCCTGATATATATCTTGAATAAAGTCTTAACATTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1354, gnl|bosTau2|chr11 (36510636-36511970)
               

               
               1-1354, gnl|Hg17|chr2 (86354137-86352789)
               

               
               1-1354, gnl|Mm7|chr6 (71827390-71828625)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1354, gnl|bosTau2|chr11 (36510636-36511970)
               

               
               1-1354, gnl|Hg17|chr2 (86354137-86352789)
               

               
               1-1354, gnl|Mm7|chr6 (71827390-71828625)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               tbr (0.462535)
               

               
               sug (0.381874)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.462535)
               

               
               sug (0.381874)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

	1-1354, gnl\|bosTau2\|chr11 (36510636-36511970)
	1-1354, gnl\|Hg17\|chr2 (86354137-86352789)
	1-1354, gnl\|Mm7\|chr6 (71827390-71828625)

	tbr (0.462535)
	sug (0.381874)
	cte (0.29274)
	fce (0.271592)
	cbe (0.239234)
	ecc (0.23007)
	ece (0.229305)
	hea (0.204499)
	eye (0.170503)
	cut (0.169924)
	fco (0.157208)
	liv (0.146284)
	ssp (0.13552)
	ste (0.135208)
	eru (0.120048)
	ebs (0.118301)
	nbm (0.0993246)