Non-Coding RNA Search

Ss1.1-Pig4-TMW8034N17.5

Sequence:


               
               AAGCCTCCCAGATCTCAGTGTTGTATGAACATCAGTTCAGCCTTATACCTCGAGGTGAGG
TATAATTACCCTCATTTCACATTCGGGGCAACTGAAGTGACTCGCTCCAAAGTGACTTTG
CAAAAACTGCTTGGGCCTCGGGTTGTGATCCGATAAAGAACTTTGGTCTTAGGCAGTAAA
GGAAAATCCCTAATTGTGCATCACAACCAAAGATTTAGAAAGGGGAGAAAATTTGAGCTA
GCAGTGGATATTTCTATTTGAATTAATTGCGTATCAGTTTCCAGGATTTTTTTTTTTTTT
TAAGGTGAGAAACTATGAGACCAAAACACACACACATAAAAAAAAAAAAAAAAAAACTGA
GGACTGGAGCATCTTAGTCTCTTTAGCTGCATCTAATAACTAGAATGCATTGTGTACATG
CCCCTCAGTTAATTTAAGAAAGAAGGACGTCTCATATTGCCATATGTGGAGAGATTAAGA
ATGGTAGCTTTAGTCTTTATTTTTTGTTCTGGAAACGTGCTTTTTACATTTGAATGTATA
AAAATATTTTTTGACTCTTCTCAGGGATCAAAATTTAAATTTTACTGACTGTAGCGGAAG
GTAAATCTCTTAAACTTACTCAGGTTTCCTCTCTTTTTGCCTCCATATTTAAGAAAACAT
AGAATGCCTGCCAGGGAAATATTTAAAAATCAGCATTCCAAATACAATTTAATAATACCA
AATTGTAAATAAACCAATTTTACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCCTCCCAGATCTCAGTGTTGTATGAACATCAGTTCAGCCTTATACCTCGAGGTGAGG
TATAATTACCCTCATTTCACATTCGGGGCAACTGAAGTGACTCGCTCCAAAGTGACTTTG
CAAAAACTGCTTGGGCCTCGGGTTGTGATCCGATAAAGAACTTTGGTCTTAGGCAGTAAA
GGAAAATCCCTAATTGTGCATCACAACCAAAGATTTAGAAAGGGGAGAAAATTTGAGCTA
GCAGTGGATATTTCTATTTGAATTAATTGCGTATCAGTTTCCAGGATTTTTTTTTTTTTT
TAAGGTGAGAAACTATGAGACCAAAACACACACACATAAAAAAAAAAAAAAAAAAACTGA
GGACTGGAGCATCTTAGTCTCTTTAGCTGCATCTAATAACTAGAATGCATTGTGTACATG
CCCCTCAGTTAATTTAAGAAAGAAGGACGTCTCATATTGCCATATGTGGAGAGATTAAGA
ATGGTAGCTTTAGTCTTTATTTTTTGTTCTGGAAACGTGCTTTTTACATTTGAATGTATA
AAAATATTTTTTGACTCTTCTCAGGGATCAAAATTTAAATTTTACTGACTGTAGCGGAAG
GTAAATCTCTTAAACTTACTCAGGTTTCCTCTCTTTTTGCCTCCATATTTAAGAAAACAT
AGAATGCCTGCCAGGGAAATATTTAAAAATCAGCATTCCAAATACAATTTAATAATACCA
AATTGTAAATAAACCAATTTTACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-96, - strand, RNAz p=0.915793

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-96, - strand, RNAz p=0.915793

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-328, gnl|bosTau2|chr5 (30031900-30032210)
               

               
               1-328, gnl|canFam2|chr10 (12982218-12982634)
               

               
               1-328, gnl|dasNov1|scaffold_29543 (3393-2950)
               

               
               1-328, gnl|hg17|chr12 (66344436-66344856)
               

               
               1-328, gnl|Hg17|chr12 (66344500-66344813)
               

               
               1-328, gnl|loxAfr1|scaffold_11040 (14588-15009)
               

               
               1-328, gnl|mm7|chr10 (118253703-118253378)
               

               
               1-328, gnl|oryCun1|scaffold_198108 (90064-90446)
               

               
               1-328, gnl|panTro1|chr10 (67867503-67867922)
               

               
               1-328, gnl|rheMac2|chr11 (64654632-64655056)
               

               
               1-328, gnl|rn3|chr7 (58133299-58132976)
               


               
               338-744, gnl|bosTau2|chr5 (30032200-30032608)
               

               
               338-744, gnl|Hg17|chr12 (66344811-66345203)
               

               
               338-744, gnl|Mm7|chr10 (118253425-118252973)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-328, gnl|bosTau2|chr5 (30031900-30032210)
               

               
               1-328, gnl|canFam2|chr10 (12982218-12982634)
               

               
               1-328, gnl|dasNov1|scaffold_29543 (3393-2950)
               

               
               1-328, gnl|hg17|chr12 (66344436-66344856)
               

               
               1-328, gnl|Hg17|chr12 (66344500-66344813)
               

               
               1-328, gnl|loxAfr1|scaffold_11040 (14588-15009)
               

               
               1-328, gnl|mm7|chr10 (118253703-118253378)
               

               
               1-328, gnl|oryCun1|scaffold_198108 (90064-90446)
               

               
               1-328, gnl|panTro1|chr10 (67867503-67867922)
               

               
               1-328, gnl|rheMac2|chr11 (64654632-64655056)
               

               
               1-328, gnl|rn3|chr7 (58133299-58132976)
               


               
               338-744, gnl|bosTau2|chr5 (30032200-30032608)
               

               
               338-744, gnl|Hg17|chr12 (66344811-66345203)
               

               
               338-744, gnl|Mm7|chr10 (118253425-118252973)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               liv (0.146284)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)

	1-328, gnl\|bosTau2\|chr5 (30031900-30032210)
	1-328, gnl\|canFam2\|chr10 (12982218-12982634)
	1-328, gnl\|dasNov1\|scaffold_29543 (3393-2950)
	1-328, gnl\|hg17\|chr12 (66344436-66344856)
	1-328, gnl\|Hg17\|chr12 (66344500-66344813)
	1-328, gnl\|loxAfr1\|scaffold_11040 (14588-15009)
	1-328, gnl\|mm7\|chr10 (118253703-118253378)
	1-328, gnl\|oryCun1\|scaffold_198108 (90064-90446)
	1-328, gnl\|panTro1\|chr10 (67867503-67867922)
	1-328, gnl\|rheMac2\|chr11 (64654632-64655056)
	1-328, gnl\|rn3\|chr7 (58133299-58132976)

	338-744, gnl\|bosTau2\|chr5 (30032200-30032608)
	338-744, gnl\|Hg17\|chr12 (66344811-66345203)
	338-744, gnl\|Mm7\|chr10 (118253425-118252973)