Non-Coding RNA Search

Ss1.1-Pig4-TMW8034O02.3

Sequence:


               
               CAGAATCTGTGAATAAAATGGGGGTGTTTCCTGAAGTAAAAGAAAACAGAAGTTTGCAGT
TGAGATTGATGGGCTTTTCCATGGGGTATGGCAACTCCTGAGCAAATCATTTTAGGTGAC
TGCATTTGAAGGGAAAACGTCTCCATTCCCTCATCTTTATGCCTGCAAAAGAGTCAGCTG
TTGCATTTATGAAACCTAGAACTTCTCTATTAAAAAAGAGAGTTGATCTAAAATTAAATT
ATTGTAAAGAGCAAGCATAGACATACGTCTATCAGTTGAATTGTTCATTACAGTAAAACT
TGACTGTGGACAAGTTGACTGTGGCAGTAAACTGTCTTTTGTCTCATTCCAAAAAGAACA
AAAACTGCTAGGAAGTTCAGGTTCTGAAATATGCAGTTTGGTGCTTTTAAGGGTTCCTAG
AAGTATAGAAAGTCATCAAGTAAACACTACATTTCTAATCATCTCGGAGTTGTGGCTGTT
CCCTCTTCAGCAATTGGTCCACAGGGTAAATTTCAATGATTCATGTATTTTCCATTGTTG
CTTCTGAGGGGCTTTCACACAAGACAAAGGAAAGCTAGTGGAACGGAAAGAAGAGTTACA
CCTTGTGGGTGTGAGTTTGGAACCTGCTGGTCCATGGGAATGTCACTCCCTGGAAATACA
GGTTCAGCATGTTTTGCACTTGTTATTTTGTAGCTTTAATGACTTTTGTTTTCTAATAGG
GCTAACATCTCTAAGCTTGGTGCTTAGAGCCGCTTCATATTTTAAACTAGTTCCATTTCA
CAGCTCTAGTTGTTCAAACCAGTTTTTACAGCCTCCTGGATGGGTCATCTTGACCTAAAC
TCTTGAACTATTATGTTTTGAGATGTCTTCATACCAGAATGTACCAAAAAGTACACAGCG
TGAAGGTAATTTAAAGCAAATAACAAACACACAGTTTATTTCATGTCTTGACTTTATGTA
AGCAGATAAGCAGAAACTTGCTTAATTTGTCACTTTGGTTGGTGTGTCATCTATTTTTGA
CTGAAAATTGTAGGAAGTTGTTTCTCTAAAGGAGTCCATTTAGGGGTAGAAGAACGGGGT
TAGCAGTTTTGCCTCAGATTCAAACTGGCATCACCATAAACCCAGTATGCTGGGGTGGAA
TGAAATCAGCTTTTTATAGTTGAAATAAAATTTTTTATTCACCATTGTCTGCACAAATCC
TTGAAAATAAAATTTCTTTCCCTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAATCTGTGAATAAAATGGGGGTGTTTCCTGAAGTAAAAGAAAACAGAAGTTTGCAGT
TGAGATTGATGGGCTTTTCCATGGGGTATGGCAACTCCTGAGCAAATCATTTTAGGTGAC
TGCATTTGAAGGGAAAACGTCTCCATTCCCTCATCTTTATGCCTGCAAAAGAGTCAGCTG
TTGCATTTATGAAACCTAGAACTTCTCTATTAAAAAAGAGAGTTGATCTAAAATTAAATT
ATTGTAAAGAGCAAGCATAGACATACGTCTATCAGTTGAATTGTTCATTACAGTAAAACT
TGACTGTGGACAAGTTGACTGTGGCAGTAAACTGTCTTTTGTCTCATTCCAAAAAGAACA
AAAACTGCTAGGAAGTTCAGGTTCTGAAATATGCAGTTTGGTGCTTTTAAGGGTTCCTAG
AAGTATAGAAAGTCATCAAGTAAACACTACATTTCTAATCATCTCGGAGTTGTGGCTGTT
CCCTCTTCAGCAATTGGTCCACAGGGTAAATTTCAATGATTCATGTATTTTCCATTGTTG
CTTCTGAGGGGCTTTCACACAAGACAAAGGAAAGCTAGTGGAACGGAAAGAAGAGTTACA
CCTTGTGGGTGTGAGTTTGGAACCTGCTGGTCCATGGGAATGTCACTCCCTGGAAATACA
GGTTCAGCATGTTTTGCACTTGTTATTTTGTAGCTTTAATGACTTTTGTTTTCTAATAGG
GCTAACATCTCTAAGCTTGGTGCTTAGAGCCGCTTCATATTTTAAACTAGTTCCATTTCA
CAGCTCTAGTTGTTCAAACCAGTTTTTACAGCCTCCTGGATGGGTCATCTTGACCTAAAC
TCTTGAACTATTATGTTTTGAGATGTCTTCATACCAGAATGTACCAAAAAGTACACAGCG
TGAAGGTAATTTAAAGCAAATAACAAACACACAGTTTATTTCATGTCTTGACTTTATGTA
AGCAGATAAGCAGAAACTTGCTTAATTTGTCACTTTGGTTGGTGTGTCATCTATTTTTGA
CTGAAAATTGTAGGAAGTTGTTTCTCTAAAGGAGTCCATTTAGGGGTAGAAGAACGGGGT
TAGCAGTTTTGCCTCAGATTCAAACTGGCATCACCATAAACCCAGTATGCTGGGGTGGAA
TGAAATCAGCTTTTTATAGTTGAAATAAAATTTTTTATTCACCATTGTCTGCACAAATCC
TTGAAAATAAAATTTCTTTCCCTAAAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               993-1236, gnl|bosTau2|chr2 (22120483-22120245)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               993-1236, gnl|bosTau2|chr2 (22120483-22120245)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               rec (0.692281)
               

               
               pro (0.512033)
               

               
               ski (0.29347)
               

               
               bla (0.248694)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               cty (0.10408)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.692281)
               

               
               pro (0.512033)
               

               
               ski (0.29347)
               

               
               bla (0.248694)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               cty (0.10408)

	rec (0.692281)
	pro (0.512033)
	ski (0.29347)
	bla (0.248694)
	pgl (0.236967)
	pan (0.23596)
	mgp (0.230681)
	sag (0.182715)
	gul (0.177588)
	mga (0.160205)
	lun (0.150489)
	liv (0.146284)
	spl (0.143184)
	pty (0.142714)
	sug (0.127291)
	ese (0.126502)
	cty (0.10408)