Non-Coding RNA Search

Ss1.1-Pig4-TMW8034O17.5

Sequence:


               
               GGGGCAGAGGCGGGGGCCGGCAGGTGCGGAGGCGTGAGGATGCCCCGAGCGCGAAAGAGC
CGGTAGGCAGCGCCCCGCGTGCAGGGCGCGCCGGGCCGCGCGGCCGCTCCTCCGCGAGGC
TGCGCGGCTGGGCGGGTCGGGCCGGAGCAGCGTCCCGGCATGTCGCAAGGGCTCCCGGCC
GCCGGCAGCGTTCTGCAGAGGAGCGTTTCGGCTTCTGGGAACCAGGCACAGCCGCAGAGC
CCCGAGGATGATGACAGGAAGGTCCGAAGGAGAGAAAAAAACCGAGTTGCTGCTCAGAGA
AGTCGGAAGAAGCAAACCCAGAAGGCTGACAAACTCCACGAGGAATATGAATGCCTGGAG
CAAGAAAACGCAGTGCTGCGGAGGGAGATCGGGAAGCTGACGGAGGAGCTGAAGCACCTG
AGTGAGGCGCTGAAGGAGCACGAGAAGATGTGCCCACTGCTGCTGTGCCCCATGAACTTT
GTGCCGGTGCCTCGGCCAGACCCCGTGCCTGGCTGCCTGCCCCGGTGAAGCCCAAGGACG
GCCCTCCTTTGCCCAGCGAGGAGTGTTGGTCTTTTTCGCACCTGGGAGGAGGCTTCTGCC
GGCATCTGTGGACCGGGGGTCCTGTGGCCGGGTCACCTCCTCAGAGCTTCGGGCCGTGTC
CCCAGCAGCCCAGGCTCAGCTTGATGCTCCCACAGGTGCCTGGCTCGGAGCTTGCGCGGA
TCCAGGCGGGGAGGCCATCCTCAAGCATCACTGTGCATCCACTTTGGCAGCTAGGAGGTT
CCGCTGTTGTGCAGAATCATGTCCTCCAGAGAATGGATAATAAAGTGGGAATCTTCGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCAGAGGCGGGGGCCGGCAGGTGCGGAGGCGTGAGGATGCCCCGAGCGCGAAAGAGC
CGGTAGGCAGCGCCCCGCGTGCAGGGCGCGCCGGGCCGCGCGGCCGCTCCTCCGCGAGGC
TGCGCGGCTGGGCGGGTCGGGCCGGAGCAGCGTCCCGGCATGTCGCAAGGGCTCCCGGCC
GCCGGCAGCGTTCTGCAGAGGAGCGTTTCGGCTTCTGGGAACCAGGCACAGCCGCAGAGC
CCCGAGGATGATGACAGGAAGGTCCGAAGGAGAGAAAAAAACCGAGTTGCTGCTCAGAGA
AGTCGGAAGAAGCAAACCCAGAAGGCTGACAAACTCCACGAGGAATATGAATGCCTGGAG
CAAGAAAACGCAGTGCTGCGGAGGGAGATCGGGAAGCTGACGGAGGAGCTGAAGCACCTG
AGTGAGGCGCTGAAGGAGCACGAGAAGATGTGCCCACTGCTGCTGTGCCCCATGAACTTT
GTGCCGGTGCCTCGGCCAGACCCCGTGCCTGGCTGCCTGCCCCGGTGAAGCCCAAGGACG
GCCCTCCTTTGCCCAGCGAGGAGTGTTGGTCTTTTTCGCACCTGGGAGGAGGCTTCTGCC
GGCATCTGTGGACCGGGGGTCCTGTGGCCGGGTCACCTCCTCAGAGCTTCGGGCCGTGTC
CCCAGCAGCCCAGGCTCAGCTTGATGCTCCCACAGGTGCCTGGCTCGGAGCTTGCGCGGA
TCCAGGCGGGGAGGCCATCCTCAAGCATCACTGTGCATCCACTTTGGCAGCTAGGAGGTT
CCGCTGTTGTGCAGAATCATGTCCTCCAGAGAATGGATAATAAAGTGGGAATCTTCGCTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9NR55_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9NR55_HUMAN

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-237, gnl|bosTau2|chr16 (52906128-52906363)
               

               
               1-237, gnl|echTel1|scaffold_310552 (14192-14399)
               

               
               1-237, gnl|hg17|chr1 (209261400-209261594)
               

               
               1-237, gnl|Hg17|chr1 (209261622-209261422)
               

               
               1-237, gnl|loxAfr1|scaffold_36645 (8680-8520)
               

               
               1-237, gnl|mm7|chr1 (190652045-190651900)
               

               
               1-237, gnl|monDom2|scaffold_13 (16776181-16776402)
               

               
               1-237, gnl|panTro1|chr1 (192904460-192904642)
               

               
               1-237, gnl|rheMac2|chr1 (157717280-157717096)
               

               
               1-237, gnl|rn3|chr13 (107317954-107317809)
               

               
               1-237, gnl|xenTro1|scaffold_18 (2092426-2092250)
               


               
               341-825, gnl|bosTau2|chr16 (52918956-52919435)
               

               
               341-825, gnl|Hg17|chr1 (209248718-209248221)
               

               
               341-825, gnl|Mm7|chr1 (190661955-190662439)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-237, gnl|bosTau2|chr16 (52906128-52906363)
               

               
               1-237, gnl|echTel1|scaffold_310552 (14192-14399)
               

               
               1-237, gnl|hg17|chr1 (209261400-209261594)
               

               
               1-237, gnl|Hg17|chr1 (209261622-209261422)
               

               
               1-237, gnl|loxAfr1|scaffold_36645 (8680-8520)
               

               
               1-237, gnl|mm7|chr1 (190652045-190651900)
               

               
               1-237, gnl|monDom2|scaffold_13 (16776181-16776402)
               

               
               1-237, gnl|panTro1|chr1 (192904460-192904642)
               

               
               1-237, gnl|rheMac2|chr1 (157717280-157717096)
               

               
               1-237, gnl|rn3|chr13 (107317954-107317809)
               

               
               1-237, gnl|xenTro1|scaffold_18 (2092426-2092250)
               


               
               341-825, gnl|bosTau2|chr16 (52918956-52919435)
               

               
               341-825, gnl|Hg17|chr1 (209248718-209248221)
               

               
               341-825, gnl|Mm7|chr1 (190661955-190662439)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               med (0.232504)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               cly (0.120642)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               cly (0.120642)

	1-237, gnl\|bosTau2\|chr16 (52906128-52906363)
	1-237, gnl\|echTel1\|scaffold_310552 (14192-14399)
	1-237, gnl\|hg17\|chr1 (209261400-209261594)
	1-237, gnl\|Hg17\|chr1 (209261622-209261422)
	1-237, gnl\|loxAfr1\|scaffold_36645 (8680-8520)
	1-237, gnl\|mm7\|chr1 (190652045-190651900)
	1-237, gnl\|monDom2\|scaffold_13 (16776181-16776402)
	1-237, gnl\|panTro1\|chr1 (192904460-192904642)
	1-237, gnl\|rheMac2\|chr1 (157717280-157717096)
	1-237, gnl\|rn3\|chr13 (107317954-107317809)
	1-237, gnl\|xenTro1\|scaffold_18 (2092426-2092250)

	341-825, gnl\|bosTau2\|chr16 (52918956-52919435)
	341-825, gnl\|Hg17\|chr1 (209248718-209248221)
	341-825, gnl\|Mm7\|chr1 (190661955-190662439)

	med (0.232504)
	nco (0.161734)
	lnt (0.142308)
	pla (0.133672)
	cly (0.120642)