Non-Coding RNA Search

Ss1.1-Pig4-TMW8034O20.3

Sequence:


               
               CTTTTATGTCACCGCGATACGCAGGCGGCCCCCGGCCCCCGATCAGAATGGGAAACCAGC
CTCCAGGCGGAGTTCCTGGGACACAGCCACTGCTGCCCAATTCCATGGATCCCACACGGC
AACAAGGGCACCCCAACATGGGAGGATCCATGCAGAGAATGAACCCTCCCCGAGGCATGG
GGCCTATGGGGCCCGGCCCACAGAATTACGGCAGCGGCATGAGACCACCACCCAACTCCC
TCGGCCCCGCCATGCCCGGGATTAACATGGGCCCGGGAGCTGGCAGACCCTGGCCCAATC
CTAACAGTGCTAACTCAATTCCGTACTCCTCCTCCTCACCCGGTACCTACGTGGGACCTC
CTGGTGGTGGCGGCCCCCCAGGAACACCCATCATGCCTAGTCCTGCAGATTCAACAAATT
CCAGTGACAACATCTACACAATGATTAATCCGGTGCCGCCTGGAGGCAGCCGATCCAACT
TCCCCATGGGTCCAGGCTCGGACGGCCCGATGGGGGGCATGGGCGGCATGGAGCCACACC
ACATGAACGGCTCATTAGGGTCAGGTGACATAGACGGACTTCCAAAAAATTCTCCTAACA
ACATAAGTGGCATTAGCAATCCTCCGGGCACCCCTCGAGACGATGGCGAGCTAGGGGGGA
ACTTCCTCCACTCCTTCCAGAATGACAATTATTCTCCAAGCATGACGATGAGTGTGTGAC
CCCCTCCTCTTCTCCGAGACGCTGCGAGAGCCGGCATTACAGGCGGGAAGATGCCAGAAG
TTATGCAAGAAGAAGTGAGGTGTCGTTACCCAGGAGCTGGGGGAGGGGCGCCTCCCGCTC
CCCCCACCCCTCCCCGCCCCCCGTCCCAGTTTTAGTTTTCATGCAATAAAAAGGCTGAAC
TTTTTATTCCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTATGTCACCGCGATACGCAGGCGGCCCCCGGCCCCCGATCAGAATGGGAAACCAGC
CTCCAGGCGGAGTTCCTGGGACACAGCCACTGCTGCCCAATTCCATGGATCCCACACGGC
AACAAGGGCACCCCAACATGGGAGGATCCATGCAGAGAATGAACCCTCCCCGAGGCATGG
GGCCTATGGGGCCCGGCCCACAGAATTACGGCAGCGGCATGAGACCACCACCCAACTCCC
TCGGCCCCGCCATGCCCGGGATTAACATGGGCCCGGGAGCTGGCAGACCCTGGCCCAATC
CTAACAGTGCTAACTCAATTCCGTACTCCTCCTCCTCACCCGGTACCTACGTGGGACCTC
CTGGTGGTGGCGGCCCCCCAGGAACACCCATCATGCCTAGTCCTGCAGATTCAACAAATT
CCAGTGACAACATCTACACAATGATTAATCCGGTGCCGCCTGGAGGCAGCCGATCCAACT
TCCCCATGGGTCCAGGCTCGGACGGCCCGATGGGGGGCATGGGCGGCATGGAGCCACACC
ACATGAACGGCTCATTAGGGTCAGGTGACATAGACGGACTTCCAAAAAATTCTCCTAACA
ACATAAGTGGCATTAGCAATCCTCCGGGCACCCCTCGAGACGATGGCGAGCTAGGGGGGA
ACTTCCTCCACTCCTTCCAGAATGACAATTATTCTCCAAGCATGACGATGAGTGTGTGAC
CCCCTCCTCTTCTCCGAGACGCTGCGAGAGCCGGCATTACAGGCGGGAAGATGCCAGAAG
TTATGCAAGAAGAAGTGAGGTGTCGTTACCCAGGAGCTGGGGGAGGGGCGCCTCCCGCTC
CCCCCACCCCTCCCCGCCCCCCGTCCCAGTTTTAGTTTTCATGCAATAAAAAGGCTGAAC
TTTTTATTCCGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9BT57_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BT57_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-179, gnl|bosTau2|chr3 (16154740-16154562)
               

               
               1-179, gnl|Hg17|chr6 (83031133-83030895)
               

               
               1-179, gnl|Mm7|chr4 (53676472-53676702)
               


               
               243-722, gnl|bosTau2|chr3 (16154553-16154077)
               

               
               243-722, gnl|Hg17|chr6 (83030886-83030429)
               

               
               243-722, gnl|Mm7|chr4 (53676711-53677166)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-179, gnl|bosTau2|chr3 (16154740-16154562)
               

               
               1-179, gnl|Hg17|chr6 (83031133-83030895)
               

               
               1-179, gnl|Mm7|chr4 (53676472-53676702)
               


               
               243-722, gnl|bosTau2|chr3 (16154553-16154077)
               

               
               243-722, gnl|Hg17|chr6 (83030886-83030429)
               

               
               243-722, gnl|Mm7|chr4 (53676711-53677166)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fty (0.527519)
               

               
               cga (0.279096)
               

               
               cbe (0.239234)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.527519)
               

               
               cga (0.279096)
               

               
               cbe (0.239234)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	1-179, gnl\|bosTau2\|chr3 (16154740-16154562)
	1-179, gnl\|Hg17\|chr6 (83031133-83030895)
	1-179, gnl\|Mm7\|chr4 (53676472-53676702)

	243-722, gnl\|bosTau2\|chr3 (16154553-16154077)
	243-722, gnl\|Hg17\|chr6 (83030886-83030429)
	243-722, gnl\|Mm7\|chr4 (53676711-53677166)

	fty (0.527519)
	cga (0.279096)
	cbe (0.239234)
	eep (0.122564)
	pgl (0.118483)
	ebs (0.118301)