Non-Coding RNA Search

Ss1.1-Pig4-TMW8034O23.5

Sequence:


               
               GGCTGAGGGGAGCCGCTGACAAGAGCTGCATGGAGGACCCTGCGGCGCCCGGGGCCGGGA
GCCCGCCGGCCAACGGCAACGGCGTTGGCAACGGCAGCGGCAAAGGGAAGCCGGTGGCGC
CTAAGGGCCGGGAGGCGTTCAGAAGCCAGCGGCGGGAGTCAGAGGGCTCTGTGGACTGCC
CCACCCTGGAATTTGAATATGGAGATGCAGATGGGCATGCAGCAGAGTTGTCAGAACTGT
ATAGCTACACTGAAAACCCGGAATTCACCACTAACAGGAGGTGCTTTGAAGAAGATTTCA
AGACCCAAGTGCAGGGTAAAGAGTGGCTGGAGTTGGAGGAAGATGCCCAGAAGGCCTATG
TGATGGGGCTCCTGGACCGCCTGGAGGTGGTCAGTAGGGAGCGGCGACTAAAGGTGGCCC
GGGCTGTTCTCTACCTGGCCCAAGGTGAGTAGCCACCTTTGCCAAGTTGAGAAGGGTGGA
GACTAGGGAGAGAAATGGTGTTATCAGGACTAGGATGAGGCAAGCCATGCTGGGAAAACA
AGGTCCCTGCCTTTCAAAGACAGATCTTGTCATGTGCTAGGAGTTAGCTTGTGCTTGTGT
GGAAGATGAGGAGATGGTGGTAGGCACTGTTCTGCATCCTTTCAGATTGGCATTTATCTT
TCCAGGCATGCCAGGATTTATTATAGTGTTCATTTTCTGCCTTGACCTGGGCTATAATCG
TGTGTGGAAACTAGCAAGAGGGTCAGTGTAGCCAGAGCTGACAGTTTGCTACCAGCTGAG
CGTGGAGGCTTCTTTCATCAGCTGTGGCCTGGCTCTGACACTGAGGGGAGGCAGGGTGGG
CGTCACAAATTTACACATGGACTCTCTGCATTGTTTTTCATTGGCATTTAGAAGATTCAA
GCCAGCATAGCAGCAGGAATGGATGCTGTAATTTGGAGATGCTCAGAACTCAGTGAGATT
AACTGAGGAAAGTTTCCCAGAAGAGACCTGTTAGCCAGATGTTGGAAGAGAAACGAGGTA
GCCTAGCTGGAGTAGTAAGCCCTGAGATCATAAATAAGAGGACTATTGGCAGAACCAGCT
AGCTGGGAGCTAAAAGACTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGAGGGGAGCCGCTGACAAGAGCTGCATGGAGGACCCTGCGGCGCCCGGGGCCGGGA
GCCCGCCGGCCAACGGCAACGGCGTTGGCAACGGCAGCGGCAAAGGGAAGCCGGTGGCGC
CTAAGGGCCGGGAGGCGTTCAGAAGCCAGCGGCGGGAGTCAGAGGGCTCTGTGGACTGCC
CCACCCTGGAATTTGAATATGGAGATGCAGATGGGCATGCAGCAGAGTTGTCAGAACTGT
ATAGCTACACTGAAAACCCGGAATTCACCACTAACAGGAGGTGCTTTGAAGAAGATTTCA
AGACCCAAGTGCAGGGTAAAGAGTGGCTGGAGTTGGAGGAAGATGCCCAGAAGGCCTATG
TGATGGGGCTCCTGGACCGCCTGGAGGTGGTCAGTAGGGAGCGGCGACTAAAGGTGGCCC
GGGCTGTTCTCTACCTGGCCCAAGGTGAGTAGCCACCTTTGCCAAGTTGAGAAGGGTGGA
GACTAGGGAGAGAAATGGTGTTATCAGGACTAGGATGAGGCAAGCCATGCTGGGAAAACA
AGGTCCCTGCCTTTCAAAGACAGATCTTGTCATGTGCTAGGAGTTAGCTTGTGCTTGTGT
GGAAGATGAGGAGATGGTGGTAGGCACTGTTCTGCATCCTTTCAGATTGGCATTTATCTT
TCCAGGCATGCCAGGATTTATTATAGTGTTCATTTTCTGCCTTGACCTGGGCTATAATCG
TGTGTGGAAACTAGCAAGAGGGTCAGTGTAGCCAGAGCTGACAGTTTGCTACCAGCTGAG
CGTGGAGGCTTCTTTCATCAGCTGTGGCCTGGCTCTGACACTGAGGGGAGGCAGGGTGGG
CGTCACAAATTTACACATGGACTCTCTGCATTGTTTTTCATTGGCATTTAGAAGATTCAA
GCCAGCATAGCAGCAGGAATGGATGCTGTAATTTGGAGATGCTCAGAACTCAGTGAGATT
AACTGAGGAAAGTTTCCCAGAAGAGACCTGTTAGCCAGATGTTGGAAGAGAAACGAGGTA
GCCTAGCTGGAGTAGTAAGCCCTGAGATCATAAATAAGAGGACTATTGGCAGAACCAGCT
AGCTGGGAGCTAAAAGACTAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|52545870|emb|CAH56368.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52545870|emb|CAH56368.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               702-821, - strand, RNAz p=0.773572
               

               
               902-1104, + strand, RNAz p=0.969262

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               702-821, - strand, RNAz p=0.773572
               

               
               902-1104, + strand, RNAz p=0.969262

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-165, gnl|bosTau2|chr4 (49593172-49593014)
               

               
               1-165, gnl|Hg17|chr7 (128668238-128668394)
               

               
               1-165, gnl|Mm7|chr6 (29849173-29849377)
               


               
               308-1104, gnl|bosTau2|chr4 (49583438-49582673)
               

               
               308-1104, gnl|Hg17|chr7 (128685403-128686182)
               

               
               308-1104, gnl|Mm7|chr6 (29857110-29857828)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-165, gnl|bosTau2|chr4 (49593172-49593014)
               

               
               1-165, gnl|Hg17|chr7 (128668238-128668394)
               

               
               1-165, gnl|Mm7|chr6 (29849173-29849377)
               


               
               308-1104, gnl|bosTau2|chr4 (49583438-49582673)
               

               
               308-1104, gnl|Hg17|chr7 (128685403-128686182)
               

               
               308-1104, gnl|Mm7|chr6 (29857110-29857828)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csp (0.161186)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)

	702-821, - strand, RNAz p=0.773572
	902-1104, + strand, RNAz p=0.969262

	1-165, gnl\|bosTau2\|chr4 (49593172-49593014)
	1-165, gnl\|Hg17\|chr7 (128668238-128668394)
	1-165, gnl\|Mm7\|chr6 (29849173-29849377)

	308-1104, gnl\|bosTau2\|chr4 (49583438-49582673)
	308-1104, gnl\|Hg17\|chr7 (128685403-128686182)
	308-1104, gnl\|Mm7\|chr6 (29857110-29857828)