Ss1.1-Pig4-TMW8034P07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGCAGAGCAAAGCCGCCGGCTGGGGGCTGGAGAGGCAGGTCTGTGCGCTGCAAACATTC AGCAGGCGGAGCCTCGCGCGTGGTTCTCCAGGCTTCGCAAGGCCAGTGGCCTCGAGAACT TGTTAAGAGTCAGTTCTTAGTGAAAAAGCACTGAGCAAGGAGCCAAGACCCACCTCTTCA CTGACTTGACATCGTACAAGTCATCTTACCTCTGTGGATCTCAGTTGCCTCATCTGTAAA AAAGGAGATAAAAATTATTTACCTGCTAGAAGATGAAGTGGAGGACCATCCTTCTACAAT ATTGGTTTTTCTTGGTTACATATGTATTTACTGCTCTTGAAGCTGTGCCTATAGACATAG ACAAAACAAAAGTAAAAAATACTCAGCCTGTGGACAGTGCGAAGATAGAACCACCAGATA CTGGACTTTATTATGATGAATACCTCAAGCAAGTGATTGATGTGCTGGAAACAGATAATC ATTTCAGAGAAAAACTACAGAAAGCAGACATAGAGGAAATAAAGAGTGGAAGATTAAGCA GAGAGCTTGATTTAGTAAGTCACCATGTGAGGACAAAACTTGATGAACTGAAAAGGCAAG AAGTGGCAAGGTTACGAATGCTAATTAAAGCTAAATTGGATTCCCTTCAAGATACAGGTA TAGACCACCATGCTCTTCTAAAACAATTCGATCACCTAAACCACCTGAATCCTGACAAGT TTGAATCTACGGATTTAGATATGCTAATCAAAGCGGCTACAAGTGATCTGGAACACTATG ACAAGGCTCGACATGAAGAGTTTAAAAAATATGAAATGATGAAGGAACATGAAAGGAGAG AATACTTAAAAACACTGACTGAAGAAAAGAGAAAAGAAGAAGAATCAAAATTTGAAGAAA TGAAGAAAAAGCATGGAAATCATCCCAAAGTTAATCACCCAGGAAGCAAAGATCAACTAA AAGAGGTGTGGGAAGAGACTGATGGATTGGATCCTAATGACTTTGACCCCAAGACATTTT TCAAATTACATGATGTCAATGGCGATGGCTTCCTAGATGAACAAGAATTAGAAGCCCTAT TTACTAAAGAGTTGGAGAAAGTATATGACCCCAAAAATGAAGAGGATGATATGGTAGAAA TGGAGGAAGAGAGGCTTAGAATGAGGGAACATGTCATGAATGAGGTTGATACTAACAAAG ACCGATTAGTGACTCTAGAAGAGTTTTTGAAAGCTACAGAAAAAAGGGAATTCTTGGAGC CGGATAGCTGGGAGACATTGGATCAGCAACAGTTCTTCACAGAAGAAGAACTGAAAGAAT ATGAAAATCTTATCTCTGTACAAGAAACTGAACTTAAGAAAAAGGCAGATGAGCTTCAGA AACAAAAAGAAGAGCTACAACGTCAGCATGACCAACTTGAGGCTCAGAAGCTGGAATATC ATCAGGTTGTGCAGCAGATGGAACAAAAAAAATTACAAGCAATTTCCCCATCAGCCCCTG GTGGAGAATCAAAGATCCAGCCACACATTTGAAGCTTGAAGTCCACCAGAACTTGAAGAA AATTGTTAAATCCTCATCCGTGTCATCTTTTTACCTCCCTTCCTTTTTCTCTGCTCAATA AATATTTTAAAGCATATATGGAATAAAGGATGATACTTTTTAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGCAGAGCAAAGCCGCCGGCTGGGGGCTGGAGAGGCAGGTCTGTGCGCTGCAAACATTC AGCAGGCGGAGCCTCGCGCGTGGTTCTCCAGGCTTCGCAAGGCCAGTGGCCTCGAGAACT TGTTAAGAGTCAGTTCTTAGTGAAAAAGCACTGAGCAAGGAGCCAAGACCCACCTCTTCA CTGACTTGACATCGTACAAGTCATCTTACCTCTGTGGATCTCAGTTGCCTCATCTGTAAA AAAGGAGATAAAAATTATTTACCTGCTAGAAGATGAAGTGGAGGACCATCCTTCTACAAT ATTGGTTTTTCTTGGTTACATATGTATTTACTGCTCTTGAAGCTGTGCCTATAGACATAG ACAAAACAAAAGTAAAAAATACTCAGCCTGTGGACAGTGCGAAGATAGAACCACCAGATA CTGGACTTTATTATGATGAATACCTCAAGCAAGTGATTGATGTGCTGGAAACAGATAATC ATTTCAGAGAAAAACTACAGAAAGCAGACATAGAGGAAATAAAGAGTGGAAGATTAAGCA GAGAGCTTGATTTAGTAAGTCACCATGTGAGGACAAAACTTGATGAACTGAAAAGGCAAG AAGTGGCAAGGTTACGAATGCTAATTAAAGCTAAATTGGATTCCCTTCAAGATACAGGTA TAGACCACCATGCTCTTCTAAAACAATTCGATCACCTAAACCACCTGAATCCTGACAAGT TTGAATCTACGGATTTAGATATGCTAATCAAAGCGGCTACAAGTGATCTGGAACACTATG ACAAGGCTCGACATGAAGAGTTTAAAAAATATGAAATGATGAAGGAACATGAAAGGAGAG AATACTTAAAAACACTGACTGAAGAAAAGAGAAAAGAAGAAGAATCAAAATTTGAAGAAA TGAAGAAAAAGCATGGAAATCATCCCAAAGTTAATCACCCAGGAAGCAAAGATCAACTAA AAGAGGTGTGGGAAGAGACTGATGGATTGGATCCTAATGACTTTGACCCCAAGACATTTT TCAAATTACATGATGTCAATGGCGATGGCTTCCTAGATGAACAAGAATTAGAAGCCCTAT TTACTAAAGAGTTGGAGAAAGTATATGACCCCAAAAATGAAGAGGATGATATGGTAGAAA TGGAGGAAGAGAGGCTTAGAATGAGGGAACATGTCATGAATGAGGTTGATACTAACAAAG ACCGATTAGTGACTCTAGAAGAGTTTTTGAAAGCTACAGAAAAAAGGGAATTCTTGGAGC CGGATAGCTGGGAGACATTGGATCAGCAACAGTTCTTCACAGAAGAAGAACTGAAAGAAT ATGAAAATCTTATCTCTGTACAAGAAACTGAACTTAAGAAAAAGGCAGATGAGCTTCAGA AACAAAAAGAAGAGCTACAACGTCAGCATGACCAACTTGAGGCTCAGAAGCTGGAATATC ATCAGGTTGTGCAGCAGATGGAACAAAAAAAATTACAAGCAATTTCCCCATCAGCCCCTG GTGGAGAATCAAAGATCCAGCCACACATTTGAAGCTTGAAGTCCACCAGAACTTGAAGAA AATTGTTAAATCCTCATCCGTGTCATCTTTTTACCTCCCTTCCTTTTTCTCTGCTCAATA AATATTTTAAAGCATATATGGAATAAAGGATGATACTTTTTAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1273-1391, - strand, RNAz p=0.601421 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1273-1391, - strand, RNAz p=0.601421 |
| Aligned organism(s): 73 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
| 115-280, gnl|bosTau2|chr15 (22982873-22982711) | |
| 115-280, gnl|canFam2|chr21 (43065920-43066249) | |
| 115-280, gnl|dasNov1|scaffold_14027 (42759-43100) | |
| 115-280, gnl|echTel1|scaffold_281038 (79196-79720) | |
| 115-280, gnl|hg17|chr11 (17260740-17261082) | |
| 115-280, gnl|Hg17|chr11 (17260910-17261073) | |
| 115-280, gnl|loxAfr1|scaffold_48854 (709-367) | |
| 115-280, gnl|mm7|chr7 (112431894-112432206) | |
| 115-280, gnl|oryCun1|scaffold_209092 (55568-55890) | |
| 115-280, gnl|panTro1|chr9 (17443160-17443503) | |
| 115-280, gnl|rheMac2|chr14 (54654726-54654387) | |
| 115-280, gnl|rn3|chr1 (174749797-174750124) | |
| 523-654, gnl|bosTau2|chr15 (22964926-22964795) | |
| 523-654, gnl|canFam2|chr21 (43087884-43088026) | |
| 523-654, gnl|danRer3|chr7 (17741496-17741367) | |
| 523-654, gnl|dasNov1|scaffold_40885 (6182-6326) | |
| 523-654, gnl|echTel1|scaffold_281038 (95026-95160) | |
| 523-654, gnl|fr1|chrUn (106026551-106026409) | |
| 523-654, gnl|galGal2|chr5 (9400032-9400161) | |
| 523-654, gnl|hg17|chr11 (17279844-17279986) | |
| 523-654, gnl|Hg17|chr11 (17279865-17279996) | |
| 523-654, gnl|loxAfr1|scaffold_19191 (42323-42202) | |
| 523-654, gnl|mm7|chr7 (112448499-112448641) | |
| 523-654, gnl|Mm7|chr7 (112448520-112448651) | |
| 523-654, gnl|monDom2|scaffold_10 (54655044-54654903) | |
| 523-654, gnl|panTro1|chr9 (17462266-17462408) | |
| 523-654, gnl|rheMac2|chr14 (54635173-54635031) | |
| 523-654, gnl|rn3|chr1 (174767337-174767479) | |
| 523-654, gnl|tetNig1|chr5 (6963440-6963559) | |
| 523-654, gnl|xenTro1|scaffold_250 (1015169-1015290) | |
| 755-946, gnl|bosTau2|chr15 (22958097-22957906) | |
| 755-946, gnl|canFam2|chr21 (43096727-43096930) | |
| 755-946, gnl|danRer3|chr7 (17737381-17737177) | |
| 755-946, gnl|dasNov1|scaffold_40885 (12385-12589) | |
| 755-946, gnl|echTel1|scaffold_281038 (103814-104018) | |
| 755-946, gnl|fr1|chrUn (106025290-106025097) | |
| 755-946, gnl|galGal2|chr5 (9404530-9404726) | |
| 755-946, gnl|hg17|chr11 (17288935-17289139) | |
| 755-946, gnl|Hg17|chr11 (17288947-17289138) | |
| 755-946, gnl|loxAfr1|scaffold_19699 (3384-3586) | |
| 755-946, gnl|mm7|chr7 (112450187-112450389) | |
| 755-946, gnl|Mm7|chr7 (112450197-112450388) | |
| 755-946, gnl|monDom2|scaffold_10 (54648361-54648157) | |
| 755-946, gnl|oryCun1|scaffold_148011 (378-582) | |
| 755-946, gnl|panTro1|chr9 (17471423-17471627) | |
| 755-946, gnl|rheMac2|chr14 (54625749-54625545) | |
| 755-946, gnl|rn3|chr1 (174768887-174769087) | |
| 755-946, gnl|tetNig1|chr5 (6963985-6964189) | |
| 755-946, gnl|xenTro1|scaffold_250 (1016412-1016606) | |
| 1079-1186, gnl|bosTau2|chr15 (22956797-22956690) | |
| 1079-1186, gnl|Hg17|chr11 (17290138-17290245) | |
| 1079-1186, gnl|Mm7|chr7 (112451521-112451630) | |
| 1273-1450, gnl|bosTau2|chr15 (22947709-22947532) | |
| 1273-1450, gnl|canFam2|chr21 (43108915-43109116) | |
| 1273-1450, gnl|danRer3|chr7 (17733325-17733128) | |
| 1273-1450, gnl|dasNov1|scaffold_48627 (6728-6924) | |
| 1273-1450, gnl|echTel1|scaffold_281038 (109232-109433) | |
| 1273-1450, gnl|fr1|chrUn (106024398-106024201) | |
| 1273-1450, gnl|galGal2|chr5 (9410279-9410486) | |
| 1273-1450, gnl|hg17|chr11 (17308231-17308431) | |
| 1273-1450, gnl|Hg17|chr11 (17308248-17308425) | |
| 1273-1450, gnl|loxAfr1|scaffold_19699 (11627-11827) | |
| 1273-1450, gnl|mm7|chr7 (112458404-112458598) | |
| 1273-1450, gnl|Mm7|chr7 (112458421-112458597) | |
| 1273-1450, gnl|monDom2|scaffold_10 (54634719-54634527) | |
| 1273-1450, gnl|oryCun1|scaffold_177447 (59595-59402) | |
| 1273-1450, gnl|panTro1|chr9 (17490816-17491016) | |
| 1273-1450, gnl|rheMac2|chr14 (54604623-54604423) | |
| 1273-1450, gnl|rn3|chr1 (174777209-174777403) | |
| 1273-1450, gnl|tetNig1|chr5 (6964919-6965096) | |
| 1522-1664, gnl|bosTau2|chr15 (22946775-22946632) | |
| 1522-1664, gnl|Hg17|chr11 (17309532-17309676) | |
| 1522-1664, gnl|Mm7|chr7 (112463000-112463143) |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 115-280, gnl|bosTau2|chr15 (22982873-22982711) | |
| 115-280, gnl|canFam2|chr21 (43065920-43066249) | |
| 115-280, gnl|dasNov1|scaffold_14027 (42759-43100) | |
| 115-280, gnl|echTel1|scaffold_281038 (79196-79720) | |
| 115-280, gnl|hg17|chr11 (17260740-17261082) | |
| 115-280, gnl|Hg17|chr11 (17260910-17261073) | |
| 115-280, gnl|loxAfr1|scaffold_48854 (709-367) | |
| 115-280, gnl|mm7|chr7 (112431894-112432206) | |
| 115-280, gnl|oryCun1|scaffold_209092 (55568-55890) | |
| 115-280, gnl|panTro1|chr9 (17443160-17443503) | |
| 115-280, gnl|rheMac2|chr14 (54654726-54654387) | |
| 115-280, gnl|rn3|chr1 (174749797-174750124) | |
| 523-654, gnl|bosTau2|chr15 (22964926-22964795) | |
| 523-654, gnl|canFam2|chr21 (43087884-43088026) | |
| 523-654, gnl|danRer3|chr7 (17741496-17741367) | |
| 523-654, gnl|dasNov1|scaffold_40885 (6182-6326) | |
| 523-654, gnl|echTel1|scaffold_281038 (95026-95160) | |
| 523-654, gnl|fr1|chrUn (106026551-106026409) | |
| 523-654, gnl|galGal2|chr5 (9400032-9400161) | |
| 523-654, gnl|hg17|chr11 (17279844-17279986) | |
| 523-654, gnl|Hg17|chr11 (17279865-17279996) | |
| 523-654, gnl|loxAfr1|scaffold_19191 (42323-42202) | |
| 523-654, gnl|mm7|chr7 (112448499-112448641) | |
| 523-654, gnl|Mm7|chr7 (112448520-112448651) | |
| 523-654, gnl|monDom2|scaffold_10 (54655044-54654903) | |
| 523-654, gnl|panTro1|chr9 (17462266-17462408) | |
| 523-654, gnl|rheMac2|chr14 (54635173-54635031) | |
| 523-654, gnl|rn3|chr1 (174767337-174767479) | |
| 523-654, gnl|tetNig1|chr5 (6963440-6963559) | |
| 523-654, gnl|xenTro1|scaffold_250 (1015169-1015290) | |
| 755-946, gnl|bosTau2|chr15 (22958097-22957906) | |
| 755-946, gnl|canFam2|chr21 (43096727-43096930) | |
| 755-946, gnl|danRer3|chr7 (17737381-17737177) | |
| 755-946, gnl|dasNov1|scaffold_40885 (12385-12589) | |
| 755-946, gnl|echTel1|scaffold_281038 (103814-104018) | |
| 755-946, gnl|fr1|chrUn (106025290-106025097) | |
| 755-946, gnl|galGal2|chr5 (9404530-9404726) | |
| 755-946, gnl|hg17|chr11 (17288935-17289139) | |
| 755-946, gnl|Hg17|chr11 (17288947-17289138) | |
| 755-946, gnl|loxAfr1|scaffold_19699 (3384-3586) | |
| 755-946, gnl|mm7|chr7 (112450187-112450389) | |
| 755-946, gnl|Mm7|chr7 (112450197-112450388) | |
| 755-946, gnl|monDom2|scaffold_10 (54648361-54648157) | |
| 755-946, gnl|oryCun1|scaffold_148011 (378-582) | |
| 755-946, gnl|panTro1|chr9 (17471423-17471627) | |
| 755-946, gnl|rheMac2|chr14 (54625749-54625545) | |
| 755-946, gnl|rn3|chr1 (174768887-174769087) | |
| 755-946, gnl|tetNig1|chr5 (6963985-6964189) | |
| 755-946, gnl|xenTro1|scaffold_250 (1016412-1016606) | |
| 1079-1186, gnl|bosTau2|chr15 (22956797-22956690) | |
| 1079-1186, gnl|Hg17|chr11 (17290138-17290245) | |
| 1079-1186, gnl|Mm7|chr7 (112451521-112451630) | |
| 1273-1450, gnl|bosTau2|chr15 (22947709-22947532) | |
| 1273-1450, gnl|canFam2|chr21 (43108915-43109116) | |
| 1273-1450, gnl|danRer3|chr7 (17733325-17733128) | |
| 1273-1450, gnl|dasNov1|scaffold_48627 (6728-6924) | |
| 1273-1450, gnl|echTel1|scaffold_281038 (109232-109433) | |
| 1273-1450, gnl|fr1|chrUn (106024398-106024201) | |
| 1273-1450, gnl|galGal2|chr5 (9410279-9410486) | |
| 1273-1450, gnl|hg17|chr11 (17308231-17308431) | |
| 1273-1450, gnl|Hg17|chr11 (17308248-17308425) | |
| 1273-1450, gnl|loxAfr1|scaffold_19699 (11627-11827) | |
| 1273-1450, gnl|mm7|chr7 (112458404-112458598) | |
| 1273-1450, gnl|Mm7|chr7 (112458421-112458597) | |
| 1273-1450, gnl|monDom2|scaffold_10 (54634719-54634527) | |
| 1273-1450, gnl|oryCun1|scaffold_177447 (59595-59402) | |
| 1273-1450, gnl|panTro1|chr9 (17490816-17491016) | |
| 1273-1450, gnl|rheMac2|chr14 (54604623-54604423) | |
| 1273-1450, gnl|rn3|chr1 (174777209-174777403) | |
| 1273-1450, gnl|tetNig1|chr5 (6964919-6965096) | |
| 1522-1664, gnl|bosTau2|chr15 (22946775-22946632) | |
| 1522-1664, gnl|Hg17|chr11 (17309532-17309676) | |
| 1522-1664, gnl|Mm7|chr7 (112463000-112463143) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| pgl (0.947867) | |
| pan (0.943841) | |
| lyg (0.665513) | |
| sag (0.548145) | |
| nca (0.410621) | |
| cut (0.339847) | |
| fat (0.294855) | |
| ova (0.258264) | |
| bla (0.248694) | |
| cty (0.20816) | |
| rec (0.17307) | |
| mga (0.160205) | |
| ski (0.146735) | |
| che (0.136314) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| jca (0.11396) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.947867) | |
| pan (0.943841) | |
| lyg (0.665513) | |
| sag (0.548145) | |
| nca (0.410621) | |
| cut (0.339847) | |
| fat (0.294855) | |
| ova (0.258264) | |
| bla (0.248694) | |
| cty (0.20816) | |
| rec (0.17307) | |
| mga (0.160205) | |
| ski (0.146735) | |
| che (0.136314) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| jca (0.11396) |