Ss1.1-Pig4-TMW8034P09.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCGCAGTTTCCACCGGACGCACTTTCTGCGGGAGCTTCAGGGGTGTGCCACACACCCCC TGCGCATTGGGGCCTGCTTCCTTCGCCATGGGGACCAGTTCAGCCTTTACGCCCAGTACG TGAAGCACCGGCACAAGTTGGAGAATGGTCTGGCTGCCCTTGGCCCCCTAACCAAGGGCT CCGTGGAGGGGGGCCCTCACCTGCCCCGGGCCCTGCAGCAGCCCCTGGAGCAGCTGGCCA GGTATGGGCGGCTCCTGGAGGAGCTCCTAAGGGAAGCTGGGCCTGAACCAAGTTCTGAGC GCCAAGCTCTTGGGGCTGCCGTGCAGCTGCTCCGAGAACAAGAGACCCGTGGCAAAGACC TGCTGGCTGTGGAGGCGGTGCGTGGCTGTGAGATAGATCTGAAGGAGCAGGGGCAACTCC TGCATCGGGACCCTTTCACAGTCATCTGTGGCCGGAAAAAGTGCCTTCGCCATGTCTTTC TTTTTGAGCATCTCCTTCTGTTCAGCAAGCTCAAGGGTCCTGAAGGGGGGCCAGAGACTT TTGTTTACAAGCAGGCCTTTAAGACTGCCGACATGGGACTAACAGAAAACATTGGGGACA GTGGGCTCTGCTTTGAGTTGTGGTTTCGGCGACGTCGTGCACGAGAGGCGTACACTTTGC AGGCAGCCTCACCAGAGATCAAACTCAAGTGGACAAGTTCCATTGCTCAGCTGCTGTGGA GACAGGCAGCCCACAACAAGGAGCTCCGAGTGCAGCAGATGGTCTCCATGGGCATTGGGA ACAAACCCTTCCTGGACATCAAAGCCCTTGGGGAGCGGACGCTGAGTGCCCTGCTCACTG GAAGAGCCGCCCGCACCCGGGCCTCGGTGGCCGTGTCTTCCTTTGAGCATGCCGGCCCCT CCCTTCCCGGTCTCTCCCCGGGAGCCTGCTCCCTGCCTGCCCGCGTCGAGGAGGAGGCCT GGGATCTGGACGTCAAGCAAATTTCCCTGGCACCAGAAACACTTGACTCTTCTGGAGATG TGTCCCCAGGACCAAGAAACAGCCCCAGCCTGCAACCCCCACACCCTGGGAGCAGCACTC CCACTCTGGCCAGTGGAGGGATCTTAGGGCTATCCCGGCAGAGTCATGCCCGAGCCCTGA GTGACCCCACCACGCCTCTGTGACTGGGTGAGTCGGCAAAGGACCAGTGTGTTCCCCTGC ATCCTTCCCTCCTGCATGTACCATCCTTCCTTCCCCCAGCTGCTTGGGAGTCAGCTTCTT CCCTCTCCCAGCCCATCTCCCTCTTCTCTCCCGACTTCTAAAGAAGATCCAGAACTTGGT ACAGCCCCTCCTCTCAGCACACTTTAGGCTGGGATGGCGGGGAGGTGGGGCAGGGGGACG TAGTAAAGGACTGGATGCGCATTGAGTTCCTTCCCTCTGCTTCCTGGACAGAGAGGAGGT CAAAGGACCAGTGTGTTCCCCTGCTACTGCTATCTCTAGCTCTCCCCAGCCAGGTGCCTT CCTGCAGGAACCAGAGTGACCACACTTGCTTGTCTTCATACCCTGGAGGTGGGGAATGTA TCCCCCGTTCAGTCCTTCCCCATCCTGGGCCACTACCAACTCCCAGGACACCGTTCCGTG TCAGCCCTTCCCTGACGGCCTGTGTTCTCCCTTGGGTCCCGCCCCCGACTCTCCCTGAGA AGACTCATCTCTGCCAGGTCAACTTTAGTTCCTGGTGACTCCATTCTGGGGTGTCATAGG AAACGAAGCTATGCAAACCATTACAGAAGAGTGGGGCAGGGAACTGAAAACTTTTATATA TGTAATTACTGTTATTATTATAATACTATTGATATATTAAATATATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCGCAGTTTCCACCGGACGCACTTTCTGCGGGAGCTTCAGGGGTGTGCCACACACCCCC TGCGCATTGGGGCCTGCTTCCTTCGCCATGGGGACCAGTTCAGCCTTTACGCCCAGTACG TGAAGCACCGGCACAAGTTGGAGAATGGTCTGGCTGCCCTTGGCCCCCTAACCAAGGGCT CCGTGGAGGGGGGCCCTCACCTGCCCCGGGCCCTGCAGCAGCCCCTGGAGCAGCTGGCCA GGTATGGGCGGCTCCTGGAGGAGCTCCTAAGGGAAGCTGGGCCTGAACCAAGTTCTGAGC GCCAAGCTCTTGGGGCTGCCGTGCAGCTGCTCCGAGAACAAGAGACCCGTGGCAAAGACC TGCTGGCTGTGGAGGCGGTGCGTGGCTGTGAGATAGATCTGAAGGAGCAGGGGCAACTCC TGCATCGGGACCCTTTCACAGTCATCTGTGGCCGGAAAAAGTGCCTTCGCCATGTCTTTC TTTTTGAGCATCTCCTTCTGTTCAGCAAGCTCAAGGGTCCTGAAGGGGGGCCAGAGACTT TTGTTTACAAGCAGGCCTTTAAGACTGCCGACATGGGACTAACAGAAAACATTGGGGACA GTGGGCTCTGCTTTGAGTTGTGGTTTCGGCGACGTCGTGCACGAGAGGCGTACACTTTGC AGGCAGCCTCACCAGAGATCAAACTCAAGTGGACAAGTTCCATTGCTCAGCTGCTGTGGA GACAGGCAGCCCACAACAAGGAGCTCCGAGTGCAGCAGATGGTCTCCATGGGCATTGGGA ACAAACCCTTCCTGGACATCAAAGCCCTTGGGGAGCGGACGCTGAGTGCCCTGCTCACTG GAAGAGCCGCCCGCACCCGGGCCTCGGTGGCCGTGTCTTCCTTTGAGCATGCCGGCCCCT CCCTTCCCGGTCTCTCCCCGGGAGCCTGCTCCCTGCCTGCCCGCGTCGAGGAGGAGGCCT GGGATCTGGACGTCAAGCAAATTTCCCTGGCACCAGAAACACTTGACTCTTCTGGAGATG TGTCCCCAGGACCAAGAAACAGCCCCAGCCTGCAACCCCCACACCCTGGGAGCAGCACTC CCACTCTGGCCAGTGGAGGGATCTTAGGGCTATCCCGGCAGAGTCATGCCCGAGCCCTGA GTGACCCCACCACGCCTCTGTGACTGGGTGAGTCGGCAAAGGACCAGTGTGTTCCCCTGC ATCCTTCCCTCCTGCATGTACCATCCTTCCTTCCCCCAGCTGCTTGGGAGTCAGCTTCTT CCCTCTCCCAGCCCATCTCCCTCTTCTCTCCCGACTTCTAAAGAAGATCCAGAACTTGGT ACAGCCCCTCCTCTCAGCACACTTTAGGCTGGGATGGCGGGGAGGTGGGGCAGGGGGACG TAGTAAAGGACTGGATGCGCATTGAGTTCCTTCCCTCTGCTTCCTGGACAGAGAGGAGGT CAAAGGACCAGTGTGTTCCCCTGCTACTGCTATCTCTAGCTCTCCCCAGCCAGGTGCCTT CCTGCAGGAACCAGAGTGACCACACTTGCTTGTCTTCATACCCTGGAGGTGGGGAATGTA TCCCCCGTTCAGTCCTTCCCCATCCTGGGCCACTACCAACTCCCAGGACACCGTTCCGTG TCAGCCCTTCCCTGACGGCCTGTGTTCTCCCTTGGGTCCCGCCCCCGACTCTCCCTGAGA AGACTCATCTCTGCCAGGTCAACTTTAGTTCCTGGTGACTCCATTCTGGGGTGTCATAGG AAACGAAGCTATGCAAACCATTACAGAAGAGTGGGGCAGGGAACTGAAAACTTTTATATA TGTAATTACTGTTATTATTATAATACTATTGATATATTAAATATATTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 205-1735, - strand, RNAz p=0.998525 | |
| 1265-1462, - strand, RNAz p=0.847577 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 205-1735, - strand, RNAz p=0.998525 | |
| 1265-1462, - strand, RNAz p=0.847577 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 166-395, gnl|bosTau2|chr10 (15628089-15628318) | |
| 166-395, gnl|Hg17|chr14 (20621826-20622052) | |
| 166-395, gnl|Mm7|chr14 (47333492-47333721) | |
| 562-741, gnl|bosTau2|chr10 (15629997-15630176) | |
| 562-741, gnl|canFam2|chr15 (21181916-21182168) | |
| 562-741, gnl|danRer3|chrUn (79074500-79074764) | |
| 562-741, gnl|dasNov1|scaffold_708 (128228-128479) | |
| 562-741, gnl|echTel1|scaffold_205161 (612-369) | |
| 562-741, gnl|fr1|chrUn (50163929-50164145) | |
| 562-741, gnl|hg17|chr14 (20623619-20623869) | |
| 562-741, gnl|Hg17|chr14 (20623686-20623865) | |
| 562-741, gnl|loxAfr1|scaffold_3753 (44614-44381) | |
| 562-741, gnl|mm7|chr14 (47335892-47336146) | |
| 562-741, gnl|Mm7|chr14 (47335963-47336142) | |
| 562-741, gnl|monDom2|scaffold_12 (29388116-29387870) | |
| 562-741, gnl|oryCun1|scaffold_172423 (38808-38573) | |
| 562-741, gnl|panTro1|chrUn_random (21920620-21920870) | |
| 562-741, gnl|rheMac2|chr7 (83799315-83799565) | |
| 562-741, gnl|rn3|chr15 (27445849-27446103) | |
| 562-741, gnl|tetNig1|chr8 (6753333-6753138) | |
| 845-990, gnl|bosTau2|chr10 (15631205-15631350) | |
| 845-990, gnl|Hg17|chr14 (20625317-20625462) | |
| 845-990, gnl|Mm7|chr14 (47337651-47337796) | |
| 1110-1848, gnl|bosTau2|chr10 (15632357-15633066) | |
| 1110-1848, gnl|Hg17|chr14 (20626817-20627537) | |
| 1110-1848, gnl|Mm7|chr14 (47338657-47339296) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 166-395, gnl|bosTau2|chr10 (15628089-15628318) | |
| 166-395, gnl|Hg17|chr14 (20621826-20622052) | |
| 166-395, gnl|Mm7|chr14 (47333492-47333721) | |
| 562-741, gnl|bosTau2|chr10 (15629997-15630176) | |
| 562-741, gnl|canFam2|chr15 (21181916-21182168) | |
| 562-741, gnl|danRer3|chrUn (79074500-79074764) | |
| 562-741, gnl|dasNov1|scaffold_708 (128228-128479) | |
| 562-741, gnl|echTel1|scaffold_205161 (612-369) | |
| 562-741, gnl|fr1|chrUn (50163929-50164145) | |
| 562-741, gnl|hg17|chr14 (20623619-20623869) | |
| 562-741, gnl|Hg17|chr14 (20623686-20623865) | |
| 562-741, gnl|loxAfr1|scaffold_3753 (44614-44381) | |
| 562-741, gnl|mm7|chr14 (47335892-47336146) | |
| 562-741, gnl|Mm7|chr14 (47335963-47336142) | |
| 562-741, gnl|monDom2|scaffold_12 (29388116-29387870) | |
| 562-741, gnl|oryCun1|scaffold_172423 (38808-38573) | |
| 562-741, gnl|panTro1|chrUn_random (21920620-21920870) | |
| 562-741, gnl|rheMac2|chr7 (83799315-83799565) | |
| 562-741, gnl|rn3|chr15 (27445849-27446103) | |
| 562-741, gnl|tetNig1|chr8 (6753333-6753138) | |
| 845-990, gnl|bosTau2|chr10 (15631205-15631350) | |
| 845-990, gnl|Hg17|chr14 (20625317-20625462) | |
| 845-990, gnl|Mm7|chr14 (47337651-47337796) | |
| 1110-1848, gnl|bosTau2|chr10 (15632357-15633066) | |
| 1110-1848, gnl|Hg17|chr14 (20626817-20627537) | |
| 1110-1848, gnl|Mm7|chr14 (47338657-47339296) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| nms (0.427716) | |
| hyp (0.285673) | |
| cty (0.20816) | |
| col (0.195008) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| nca (0.136874) | |
| cov (0.132153) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| eje (0.0988338) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.427716) | |
| hyp (0.285673) | |
| cty (0.20816) | |
| col (0.195008) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| nca (0.136874) | |
| cov (0.132153) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| eje (0.0988338) |