Non-Coding RNA Search

Ss1.1-Pig4-TMW8034P14.3

Sequence:


               
               AAAGTGTACCAGCTTCTAGTCAATGAACAAGAGCCCTGCAAGTTTCTGCTAGATGCTGTG
TTTGCTAAAGGAATGACTGTACGGCAATCGAAAGAGGAGTTAATTCCTCAACTCAGGGAG
CAGTGTGGTTTAGAGCTCAGTATTGACAGGTTTCGTCTAAGGAAAAAAACATGGAAGAAT
CCTGGCACTGTCTTTTTGGATTATCATATTTATGAAGAAGATATTAATATTTCCAGCAAC
TGGGAGGTTTTCCTTGAAGTTCTTGATGGGGTGGAGAAGATGAAATCCATGTCCCAACTT
GCGGTTTTGTCAAGACGGTGGAGGCCTTCAGAAATGAAGTTGGATCCCTTCCAGGAGGTT
GTGTTGGAAAGCAGCAGTGTCGATGAGTTGCGAGAGAAGCTTTGTGAGATTAGTGGAATT
CCTTTGGAAGATATTGAATTTGCCAAGGGTAGAGGAACTTTTCCCTGTGATATTTCTGTC
CTTGATATTCATCAGGATTTGGACTGGAATCCTAAAGTTTCTACCCTGAATGTCTGGCCT
CTTTATATCTGTGATGATGGTGCAGTCATATTTTATAGGGATAAAACAGAAGAATTAATG
GAGTTGACAGATGAGCAAAGAAATGAACTGATGAAAAAAGAAAGCAGTCGACTCCAGAAG
ACGGGACATCGTGTAACGTACTCACCTCGGAAAGAGAAAGCACTAAAAATATATCTGGAT
GGAGCACCAAATAAAGATCTGACTCAAGACTGACTCTGCTAGTGTAGCCTTTTCCCTGGG
GGATTTTCGGTTTTAATTAGACGGTTCACTGCTACTGTGTAGTGCCATTATGGCCTGATG
TGGTTAGGGGTAACCCAGTGACACCAGCACTGATTGGACTGCCCTTCACCAATCAGAAGC
TCAGTGCCCAATGGGCCACTGTTTTGACTTGGAATCATGTTGTGCACTATAGTCAAATGT
ACTGTAAAGTGAAAAGGGATGTGCAAAAAAATAAAAACAAAAAAGCAAAACCTGCTACTA
GAAAAGGGGGAAGGGGAACGAGTAAACTTCTTTTTTGCGGACAGACGTGCACATAGCCGC
TAGTAAAACCAGCCTCAAACAGGATGCTCATAGCTTAATAATAAAAGCTGTGCAAAGGCC
ATGAATGAATGAATTTTCTGTTTATTTCACTGATACACACATTACCTCATTGACAATTTG
GAAGTAAATGCAACGTGTGTTGACTCTTGGAAAGCAGCAAAAATAGGAGCTGAAGAAAGA
AATTCTTAGAACCAGCTGTAACCCAGTAAAGAATTGTGAAGTGTTTCTTTTTGTTGTTTC
ATTTTTTTGCAAAGTATTAAGAACATTATTCTGGAACATCAAAACGTTTCCCTTAGACTG
CTCCTAGCAGGTGGCAGCTTAAAATGCTGCCATGTTGTAATTATAACTGATTGTACGTAA
GTTATGGATGTAGAGAATACGTTTCACTCATTCATTCAGCATGTAAATAAAATTGATCCT
ATTGAGTTATCACAATTGCAGTTCGGCTATTTCCCATGGTTATTCCTTTCACATGTCATT
CATGATGTACGTTTGTGTACATGGAGAAGTAGAGCAGTCTATGTAATGTAATCCTCAGTG
AGATTCCTCAGTACTGGGTCCCATACGATTGTATTTGCCTTTGTTAATGAGGTTTTTCTG
TTCAGCGGCTTCAGTTTTTTTGTTTTTTTTTCCTTTTGTACATTTTTTTTGAAGATGGAC
TTCAAGTTTGAATTTCCTGGAACCCTTGTAAGTCCCACTTTAATTTTTGGAGTTGATAAC
TAGTTATGTGTAGTTTAACTTTGGGGAAATGTCTTAACATCGTGTTGAATAAACTTGCTA
GCAAGTCAGGTCATGGCACAGGCTAATGCAGTCAACATGATTTCATTGCAAAGCCTATTA
GAATCAGCAAGTTTTTGCTTTGCTAAATATGACTCTTAAATGAACACAATTCTACGTAAA
TTTTTGAAAATGCCATCTAATTTATAAAAATCAATAAAAAAGGTTTTGGTAAAACTTTTT
CATGCCAGATGCTGTTTACAACAATGAACATGCCAATAAAACATTTGTTCATTCTGTTGT
GTTATTTTAGTCATTAAACTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGTGTACCAGCTTCTAGTCAATGAACAAGAGCCCTGCAAGTTTCTGCTAGATGCTGTG
TTTGCTAAAGGAATGACTGTACGGCAATCGAAAGAGGAGTTAATTCCTCAACTCAGGGAG
CAGTGTGGTTTAGAGCTCAGTATTGACAGGTTTCGTCTAAGGAAAAAAACATGGAAGAAT
CCTGGCACTGTCTTTTTGGATTATCATATTTATGAAGAAGATATTAATATTTCCAGCAAC
TGGGAGGTTTTCCTTGAAGTTCTTGATGGGGTGGAGAAGATGAAATCCATGTCCCAACTT
GCGGTTTTGTCAAGACGGTGGAGGCCTTCAGAAATGAAGTTGGATCCCTTCCAGGAGGTT
GTGTTGGAAAGCAGCAGTGTCGATGAGTTGCGAGAGAAGCTTTGTGAGATTAGTGGAATT
CCTTTGGAAGATATTGAATTTGCCAAGGGTAGAGGAACTTTTCCCTGTGATATTTCTGTC
CTTGATATTCATCAGGATTTGGACTGGAATCCTAAAGTTTCTACCCTGAATGTCTGGCCT
CTTTATATCTGTGATGATGGTGCAGTCATATTTTATAGGGATAAAACAGAAGAATTAATG
GAGTTGACAGATGAGCAAAGAAATGAACTGATGAAAAAAGAAAGCAGTCGACTCCAGAAG
ACGGGACATCGTGTAACGTACTCACCTCGGAAAGAGAAAGCACTAAAAATATATCTGGAT
GGAGCACCAAATAAAGATCTGACTCAAGACTGACTCTGCTAGTGTAGCCTTTTCCCTGGG
GGATTTTCGGTTTTAATTAGACGGTTCACTGCTACTGTGTAGTGCCATTATGGCCTGATG
TGGTTAGGGGTAACCCAGTGACACCAGCACTGATTGGACTGCCCTTCACCAATCAGAAGC
TCAGTGCCCAATGGGCCACTGTTTTGACTTGGAATCATGTTGTGCACTATAGTCAAATGT
ACTGTAAAGTGAAAAGGGATGTGCAAAAAAATAAAAACAAAAAAGCAAAACCTGCTACTA
GAAAAGGGGGAAGGGGAACGAGTAAACTTCTTTTTTGCGGACAGACGTGCACATAGCCGC
TAGTAAAACCAGCCTCAAACAGGATGCTCATAGCTTAATAATAAAAGCTGTGCAAAGGCC
ATGAATGAATGAATTTTCTGTTTATTTCACTGATACACACATTACCTCATTGACAATTTG
GAAGTAAATGCAACGTGTGTTGACTCTTGGAAAGCAGCAAAAATAGGAGCTGAAGAAAGA
AATTCTTAGAACCAGCTGTAACCCAGTAAAGAATTGTGAAGTGTTTCTTTTTGTTGTTTC
ATTTTTTTGCAAAGTATTAAGAACATTATTCTGGAACATCAAAACGTTTCCCTTAGACTG
CTCCTAGCAGGTGGCAGCTTAAAATGCTGCCATGTTGTAATTATAACTGATTGTACGTAA
GTTATGGATGTAGAGAATACGTTTCACTCATTCATTCAGCATGTAAATAAAATTGATCCT
ATTGAGTTATCACAATTGCAGTTCGGCTATTTCCCATGGTTATTCCTTTCACATGTCATT
CATGATGTACGTTTGTGTACATGGAGAAGTAGAGCAGTCTATGTAATGTAATCCTCAGTG
AGATTCCTCAGTACTGGGTCCCATACGATTGTATTTGCCTTTGTTAATGAGGTTTTTCTG
TTCAGCGGCTTCAGTTTTTTTGTTTTTTTTTCCTTTTGTACATTTTTTTTGAAGATGGAC
TTCAAGTTTGAATTTCCTGGAACCCTTGTAAGTCCCACTTTAATTTTTGGAGTTGATAAC
TAGTTATGTGTAGTTTAACTTTGGGGAAATGTCTTAACATCGTGTTGAATAAACTTGCTA
GCAAGTCAGGTCATGGCACAGGCTAATGCAGTCAACATGATTTCATTGCAAAGCCTATTA
GAATCAGCAAGTTTTTGCTTTGCTAAATATGACTCTTAAATGAACACAATTCTACGTAAA
TTTTTGAAAATGCCATCTAATTTATAAAAATCAATAAAAAAGGTTTTGGTAAAACTTTTT
CATGCCAGATGCTGTTTACAACAATGAACATGCCAATAAAACATTTGTTCATTCTGTTGT
GTTATTTTAGTCATTAAACTTTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55635597|ref|XP_521844.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55635597|ref|XP_521844.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1047-1165, - strand, RNAz p=0.58698

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1047-1165, - strand, RNAz p=0.58698

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               148-269, gnl|bosTau2|chr15 (26108339-26108460)
               

               
               148-269, gnl|Hg17|chr11 (11928485-11928606)
               

               
               148-269, gnl|Mm7|chr7 (108019874-108019995)
               


               
               576-2124, gnl|bosTau2|chr15 (26113249-26114767)
               

               
               576-2124, gnl|Hg17|chr11 (11934121-11935668)
               

               
               576-2124, gnl|Mm7|chr7 (108025468-108026937)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               148-269, gnl|bosTau2|chr15 (26108339-26108460)
               

               
               148-269, gnl|Hg17|chr11 (11928485-11928606)
               

               
               148-269, gnl|Mm7|chr7 (108019874-108019995)
               


               
               576-2124, gnl|bosTau2|chr15 (26113249-26114767)
               

               
               576-2124, gnl|Hg17|chr11 (11934121-11935668)
               

               
               576-2124, gnl|Mm7|chr7 (108025468-108026937)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               tbr (0.308356)
               

               
               cte (0.29274)
               

               
               lyg (0.266205)
               

               
               mgp (0.230681)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.308356)
               

               
               cte (0.29274)
               

               
               lyg (0.266205)
               

               
               mgp (0.230681)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	148-269, gnl\|bosTau2\|chr15 (26108339-26108460)
	148-269, gnl\|Hg17\|chr11 (11928485-11928606)
	148-269, gnl\|Mm7\|chr7 (108019874-108019995)

	576-2124, gnl\|bosTau2\|chr15 (26113249-26114767)
	576-2124, gnl\|Hg17\|chr11 (11934121-11935668)
	576-2124, gnl\|Mm7\|chr7 (108025468-108026937)

	tbr (0.308356)
	cte (0.29274)
	lyg (0.266205)
	mgp (0.230681)
	sto (0.179824)
	gul (0.177588)
	sin (0.174948)
	rec (0.17307)
	isp (0.150376)
	bfe (0.149858)
	ski (0.146735)
	spl (0.143184)
	pty (0.142714)
	ssp (0.13552)
	ste (0.135208)
	pla (0.133672)
	thg (0.126791)
	tra (0.123092)
	clu (0.119646)
	spc (0.113366)
	cty (0.10408)
	jej (0.0989218)