Non-Coding RNA Search

Ss1.1-Pig4-TMW8035A09.3.5

Sequence:


               
               TGTACCATTTGCCACGAACGTTTGGAGGACACACATTTCGTTCAGTGCCCATCCGTTCCC
AGCCACAAATTCTGCTTCCCTTGCTCTAGAGAGAGTATCAAGGCCCAGGGGGCCACTGGC
GAGGTGTACTGCCCCAGCGGAGAGAAATGCCCCCTAGTTGGGTCGAATGTACCTTGGGCC
TTCATGCAGGGCGAAATCGCGACGATCTTAGCTGGGGATGTTAAAGTGAAAAAGGAGAGA
GACCCTTGAGCCACAAGACAGCCACTCCTTTGCCCCAGACCAGCTCCTCACCCGTCCAGA
GGGCCCCTCCCCTCCCACAATCGACCCTTTCTTCCCTCGCCCCCAAGATGTAGAATTGTG
AATATATCAAACTGCAAAAAGTTAGTCTTATGTATAGACATTATTTTCGTCGTATGTTTC
TATATTTTGAAACAAAGGTATGTAACTTCTTCATTTGAAGGATAAGCTGGTTTGTGTTAA
GCAGTATAATATTGGTTGGGTCTTTTGCATCATATTCGTTAGCATTTATTGGTGGCAGAG
TGTTTGCCTAGGTACAGAATTAATAGCCCTTAGCAACGACTGCTGCTGGTGTGTATTTTT
GTAAATGTTATGCACTCACTGAAAGGAAAAAAAAACATACACAAAAGAAAACGACTTCTT
TTTTTTTTTTTTTTTTTTTGCCAAGGCCAGTGTTGCTGCCTAAAAAAAAAAAAAAAAAAA
TGCTATAAAATGGTGAGAGCTTCTTTCTAAACAGCCCCAAGTGTTGAAGTCTTCACTTTA
TTTTGTTCTGTTCTGTTCTGTTCTGTTTTCCTGTTTTTGCAAAATGGTAAGGGGGGTGTT
GGGGGGGTGTTTTCTGTTGCAAGTTTGTGAGGGAAAATGTTTTGGTTTGTTTCTACTGAC
CTGAATGTGTTGGATCTTCACGTGTTGTTTTGTTTTTGCTTTATTGATGCACGGATGCTT
TTGAACAGTAGAGCGAAATGCTAGACATGGAGAATCTGCTCTGTTTGTCCTTTATACATT
TCTGTAGTTAACAGAACACTGTAATGTGCCTTGGAGCTTAGTAACTTGTAATAAATTCAA
TTGATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTACCATTTGCCACGAACGTTTGGAGGACACACATTTCGTTCAGTGCCCATCCGTTCCC
AGCCACAAATTCTGCTTCCCTTGCTCTAGAGAGAGTATCAAGGCCCAGGGGGCCACTGGC
GAGGTGTACTGCCCCAGCGGAGAGAAATGCCCCCTAGTTGGGTCGAATGTACCTTGGGCC
TTCATGCAGGGCGAAATCGCGACGATCTTAGCTGGGGATGTTAAAGTGAAAAAGGAGAGA
GACCCTTGAGCCACAAGACAGCCACTCCTTTGCCCCAGACCAGCTCCTCACCCGTCCAGA
GGGCCCCTCCCCTCCCACAATCGACCCTTTCTTCCCTCGCCCCCAAGATGTAGAATTGTG
AATATATCAAACTGCAAAAAGTTAGTCTTATGTATAGACATTATTTTCGTCGTATGTTTC
TATATTTTGAAACAAAGGTATGTAACTTCTTCATTTGAAGGATAAGCTGGTTTGTGTTAA
GCAGTATAATATTGGTTGGGTCTTTTGCATCATATTCGTTAGCATTTATTGGTGGCAGAG
TGTTTGCCTAGGTACAGAATTAATAGCCCTTAGCAACGACTGCTGCTGGTGTGTATTTTT
GTAAATGTTATGCACTCACTGAAAGGAAAAAAAAACATACACAAAAGAAAACGACTTCTT
TTTTTTTTTTTTTTTTTTTGCCAAGGCCAGTGTTGCTGCCTAAAAAAAAAAAAAAAAAAA
TGCTATAAAATGGTGAGAGCTTCTTTCTAAACAGCCCCAAGTGTTGAAGTCTTCACTTTA
TTTTGTTCTGTTCTGTTCTGTTCTGTTTTCCTGTTTTTGCAAAATGGTAAGGGGGGTGTT
GGGGGGGTGTTTTCTGTTGCAAGTTTGTGAGGGAAAATGTTTTGGTTTGTTTCTACTGAC
CTGAATGTGTTGGATCTTCACGTGTTGTTTTGTTTTTGCTTTATTGATGCACGGATGCTT
TTGAACAGTAGAGCGAAATGCTAGACATGGAGAATCTGCTCTGTTTGTCCTTTATACATT
TCTGTAGTTAACAGAACACTGTAATGTGCCTTGGAGCTTAGTAACTTGTAATAAATTCAA
TTGATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12002026|gb|AAG43156.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12002026|gb|AAG43156.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               660-749, + strand, RNAz p=0.888739

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               660-749, + strand, RNAz p=0.888739

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-174, gnl|bosTau2|chr10 (61706215-61706042)
               

               
               1-174, gnl|Hg17|chr14 (76561746-76561573)
               

               
               1-174, gnl|Mm7|chr12 (84884417-84884244)
               


               
               343-818, gnl|bosTau2|chr10 (61705991-61705533)
               

               
               343-818, gnl|Hg17|chr14 (76561402-76560944)
               

               
               343-818, gnl|Mm7|chr12 (84884079-84883614)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-174, gnl|bosTau2|chr10 (61706215-61706042)
               

               
               1-174, gnl|Hg17|chr14 (76561746-76561573)
               

               
               1-174, gnl|Mm7|chr12 (84884417-84884244)
               


               
               343-818, gnl|bosTau2|chr10 (61705991-61705533)
               

               
               343-818, gnl|Hg17|chr14 (76561402-76560944)
               

               
               343-818, gnl|Mm7|chr12 (84884079-84883614)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)

	1-174, gnl\|bosTau2\|chr10 (61706215-61706042)
	1-174, gnl\|Hg17\|chr14 (76561746-76561573)
	1-174, gnl\|Mm7\|chr12 (84884417-84884244)

	343-818, gnl\|bosTau2\|chr10 (61705991-61705533)
	343-818, gnl\|Hg17\|chr14 (76561402-76560944)
	343-818, gnl\|Mm7\|chr12 (84884079-84883614)

	ecc (0.23007)
	ece (0.229305)
	sag (0.182715)
	fhi (0.169578)
	pty (0.142714)
	csk (0.140746)
	pla (0.133672)
	ute (0.132784)
	ese (0.126502)
	ebs (0.118301)