Non-Coding RNA Search

Ss1.1-Pig4-TMW8035A15.3

Sequence:


               
               TTTTTTTTTTTTCCCCTTAATGGACTTACATAATGCTTGTTTATTTGAGAAATACATACA
GTACTCTCCTTTGTATGAAGAATTTCTTAACAGGTAATTATAATTGCCTTTAATTGACCA
GTAGACTAATTCCACAGCCAGAACATGCATACTTTTGTGAAGCAATTACTTGAATAAGTA
GTTTTCATGGTTTTCAATATGCGATTTTAAAAAATGAGGATTCTCCTAGATTTTTTTAGA
TTAACAACTAGGAAACCGTCCTCATTATTAACAATCCATTTATATGTGTTTTCCTTAAAG
TATTCTAATGCCTATTTTCCAAGCACAGTTCTGCCCTGATTGGCTTTTTATTCAAAGAGG
TTATGCAACATTTGCTTCATAATAGAACTTTTAGATCAGTTCCTATTAAATGAGCTCTTC
TGCAGACAGCACAGTCAGTAGCCTTATCCTTTCAGTGGAATACTGTACCATATGCTCAAC
TCTGAAAACCTTGAACACGGCTAAAATCCGTCAAGATTATAAGAGCAAACTAAGTTGTGA
ACCTATAGTACATGTAGGCATTTAGTTTAAGTAGAGCAATTCAAACTGACCTGCATCCAT
TCAAAACAAGTTCCTCCTTCACCTTATTTTTACTTGAAATCTGCTAGAAGAAACAGCAAT
CCGAAATTTGTTTTATGCACGAGTTAATACCACTGGCTCAGCAAATACAAGTTAATTTGC
TTTGGGCAGGAGACTTTTTGTAATGGAAGAAATGCACTACCAAGTTAAGAGGACAGATTT
TGCTTAGAGCAGGAGGCCCTTTATTATTGCTGCAGAACAAAAGCCTGGCTGAGTTGATGT
TTGACACTCTTCTTTACTGAAATCTACATGACACTTGTTGCTGGGTTTTTGTACACGTAA
ATATTGTCAAGCTGTGAAAGAAAATGGCTGGAGGTGTGCTTTGTGTGAAAGGTGAGCAAT
AAAAGTGTATGTTCTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTCCCCTTAATGGACTTACATAATGCTTGTTTATTTGAGAAATACATACA
GTACTCTCCTTTGTATGAAGAATTTCTTAACAGGTAATTATAATTGCCTTTAATTGACCA
GTAGACTAATTCCACAGCCAGAACATGCATACTTTTGTGAAGCAATTACTTGAATAAGTA
GTTTTCATGGTTTTCAATATGCGATTTTAAAAAATGAGGATTCTCCTAGATTTTTTTAGA
TTAACAACTAGGAAACCGTCCTCATTATTAACAATCCATTTATATGTGTTTTCCTTAAAG
TATTCTAATGCCTATTTTCCAAGCACAGTTCTGCCCTGATTGGCTTTTTATTCAAAGAGG
TTATGCAACATTTGCTTCATAATAGAACTTTTAGATCAGTTCCTATTAAATGAGCTCTTC
TGCAGACAGCACAGTCAGTAGCCTTATCCTTTCAGTGGAATACTGTACCATATGCTCAAC
TCTGAAAACCTTGAACACGGCTAAAATCCGTCAAGATTATAAGAGCAAACTAAGTTGTGA
ACCTATAGTACATGTAGGCATTTAGTTTAAGTAGAGCAATTCAAACTGACCTGCATCCAT
TCAAAACAAGTTCCTCCTTCACCTTATTTTTACTTGAAATCTGCTAGAAGAAACAGCAAT
CCGAAATTTGTTTTATGCACGAGTTAATACCACTGGCTCAGCAAATACAAGTTAATTTGC
TTTGGGCAGGAGACTTTTTGTAATGGAAGAAATGCACTACCAAGTTAAGAGGACAGATTT
TGCTTAGAGCAGGAGGCCCTTTATTATTGCTGCAGAACAAAAGCCTGGCTGAGTTGATGT
TTGACACTCTTCTTTACTGAAATCTACATGACACTTGTTGCTGGGTTTTTGTACACGTAA
ATATTGTCAAGCTGTGAAAGAAAATGGCTGGAGGTGTGCTTTGTGTGAAAGGTGAGCAAT
AAAAGTGTATGTTCTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               369-488, - strand, RNAz p=0.575723
               

               
               869-978, + strand, RNAz p=0.666057

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               369-488, - strand, RNAz p=0.575723
               

               
               869-978, + strand, RNAz p=0.666057

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               900-979, + strand, RNAmicro p=0.969274

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               900-979, + strand, RNAmicro p=0.969274

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015475, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015475, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               17-978, gnl|bosTau2|chr11 (12293363-12292399)
               

               
               17-978, gnl|Hg17|chr2 (33721330-33720376)
               

               
               17-978, gnl|Mm7|chr17 (73828600-73827657)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-978, gnl|bosTau2|chr11 (12293363-12292399)
               

               
               17-978, gnl|Hg17|chr2 (33721330-33720376)
               

               
               17-978, gnl|Mm7|chr17 (73828600-73827657)

Expressed library(ies): 25 entry(ies)

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Expressed library(ies): 25 entry(ies)

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               tes (0.831255)
               

               
               sin (0.524843)
               

               
               ova (0.387397)
               

               
               tra (0.369276)
               

               
               lin (0.291206)
               

               
               ste (0.270416)
               

               
               pgl (0.236967)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               spc (0.113366)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.831255)
               

               
               sin (0.524843)
               

               
               ova (0.387397)
               

               
               tra (0.369276)
               

               
               lin (0.291206)
               

               
               ste (0.270416)
               

               
               pgl (0.236967)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               spc (0.113366)

	369-488, - strand, RNAz p=0.575723
	869-978, + strand, RNAz p=0.666057

	17-978, gnl\|bosTau2\|chr11 (12293363-12292399)
	17-978, gnl\|Hg17\|chr2 (33721330-33720376)
	17-978, gnl\|Mm7\|chr17 (73828600-73827657)

	tes (0.831255)
	sin (0.524843)
	ova (0.387397)
	tra (0.369276)
	lin (0.291206)
	ste (0.270416)
	pgl (0.236967)
	hea (0.204499)
	fcc (0.197785)
	aor (0.195274)
	ill (0.175593)
	fbs (0.175346)
	eye (0.170503)
	tbr (0.154178)
	bfe (0.149858)
	ski (0.146735)
	liv (0.146284)
	lnt (0.142308)
	hlv (0.139256)
	lyg (0.133103)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	eep (0.122564)
	spc (0.113366)