Non-Coding RNA Search

Ss1.1-Pig4-TMW8035B02.5

Sequence:


               
               CGGCCGCCGAAACACAACACCCTCAGTTCCCTCTTCTCGTGGCGCGGCGCCGCGTCGCTC
GCCTCCACCGGCTGCCATGAGCGAGCGTCTCCGCCCCAGGAAAAGGAGAAGGAATGGCAG
TGAGGAAGACCACCACCTCCCCCCGCAGACCAAAAGGAGTAGTAGAAACGCTGTCTTTCA
CGATTCCTGGGACACAGAGTCTTCCAGCAGCGACAGCGGCGGGAGCAGCAGCAGCAGCAT
CAACAGCCCGGACCGGGCCAGTGGGCCAGAAAGCAGCTTCAACCACCTGGCCAGCGGGTC
GAGCCCCCACACCCCGCAGCCCGTGCCCGAGCCGTCCGCGCTGTGCCAAGGCCCGTACTT
CCACATCAACCAGACCCTGAAGGAGGCCCACTTCCACAGCCTGCAGCACCGAGGCCGGCC
GCCCACATGACGGGCCGGCGGTTTCTTGCCTTCTGTGAAGGGACAGTGCTGTGCAGATTT
GATATTTCAACTTATGATGTTTTTAAAAATTGCACAAAAAATGCCTGTTGGCTTTTCAGT
CTATATTTGAAATAACAGGTTAACAGGCCGTTGTTTACTTGTGGTTTTGCTGCACTATTG
CGATTTCAAAGGGGCTTCGAAGCAGTTTTTTATAGGATTCTTTTGAGGGTGGGTATCAAA
TCCATGTCAAGGTAACAGTAGGAGGAAGTCTCATCTGTGTGTTGAATCCATAGTTTGTCC
AATTCAGACTGATTTCCAAATCTGTCAATTAGAAATTCTACTATATGTAAAAAGGCCTTT
TAACAATGCGGGATCTTCAATTTTTTTAAATTCAATAAACCAGTGAAGGAGTATCTAGTT
TCCATGGAAAGAAAACCTAAGTTTTTTCCAAAATAGAGAAAGCTTGATTCAGTCTTGCAC
TGAAATTAATTGCCATACTACCTCTTAGTATGAAGATGTCCTGTTGAAAGTACTCTGTCC
TCTGGGACAGGAGAAGAACCAGATCCCAGTTAGACTGTGCGACTAAGCTCCCTCCCGGGA
AACTCTTCTCTCTTCGTTATATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCCGCCGAAACACAACACCCTCAGTTCCCTCTTCTCGTGGCGCGGCGCCGCGTCGCTC
GCCTCCACCGGCTGCCATGAGCGAGCGTCTCCGCCCCAGGAAAAGGAGAAGGAATGGCAG
TGAGGAAGACCACCACCTCCCCCCGCAGACCAAAAGGAGTAGTAGAAACGCTGTCTTTCA
CGATTCCTGGGACACAGAGTCTTCCAGCAGCGACAGCGGCGGGAGCAGCAGCAGCAGCAT
CAACAGCCCGGACCGGGCCAGTGGGCCAGAAAGCAGCTTCAACCACCTGGCCAGCGGGTC
GAGCCCCCACACCCCGCAGCCCGTGCCCGAGCCGTCCGCGCTGTGCCAAGGCCCGTACTT
CCACATCAACCAGACCCTGAAGGAGGCCCACTTCCACAGCCTGCAGCACCGAGGCCGGCC
GCCCACATGACGGGCCGGCGGTTTCTTGCCTTCTGTGAAGGGACAGTGCTGTGCAGATTT
GATATTTCAACTTATGATGTTTTTAAAAATTGCACAAAAAATGCCTGTTGGCTTTTCAGT
CTATATTTGAAATAACAGGTTAACAGGCCGTTGTTTACTTGTGGTTTTGCTGCACTATTG
CGATTTCAAAGGGGCTTCGAAGCAGTTTTTTATAGGATTCTTTTGAGGGTGGGTATCAAA
TCCATGTCAAGGTAACAGTAGGAGGAAGTCTCATCTGTGTGTTGAATCCATAGTTTGTCC
AATTCAGACTGATTTCCAAATCTGTCAATTAGAAATTCTACTATATGTAAAAAGGCCTTT
TAACAATGCGGGATCTTCAATTTTTTTAAATTCAATAAACCAGTGAAGGAGTATCTAGTT
TCCATGGAAAGAAAACCTAAGTTTTTTCCAAAATAGAGAAAGCTTGATTCAGTCTTGCAC
TGAAATTAATTGCCATACTACCTCTTAGTATGAAGATGTCCTGTTGAAAGTACTCTGTCC
TCTGGGACAGGAGAAGAACCAGATCCCAGTTAGACTGTGCGACTAAGCTCCCTCCCGGGA
AACTCTTCTCTCTTCGTTATATAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CQP1_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CQP1_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               228-347, - strand, RNAz p=0.864519
               

               
               502-602, + strand, RNAz p=0.875507

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               228-347, - strand, RNAz p=0.864519
               

               
               502-602, + strand, RNAz p=0.875507

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BX648968, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX648968, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               198-1042, gnl|bosTau2|chr19 (52658766-52659593)
               

               
               198-1042, gnl|Hg17|chr17 (68717504-68716644)
               

               
               198-1042, gnl|Mm7|chr11 (113772590-113771747)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               198-1042, gnl|bosTau2|chr19 (52658766-52659593)
               

               
               198-1042, gnl|Hg17|chr17 (68717504-68716644)
               

               
               198-1042, gnl|Mm7|chr11 (113772590-113771747)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               med (0.116252)

	228-347, - strand, RNAz p=0.864519
	502-602, + strand, RNAz p=0.875507

	198-1042, gnl\|bosTau2\|chr19 (52658766-52659593)
	198-1042, gnl\|Hg17\|chr17 (68717504-68716644)
	198-1042, gnl\|Mm7\|chr11 (113772590-113771747)