Non-Coding RNA Search

Ss1.1-Pig4-TMW8035B13.3

Sequence:


               
               CATCCGAGTGTTACAAATTCAGTATTATTTACAAAGACTCTTGTTTCGGTCCTTTCGGAT
GGCTTGTCCTGTCAGCAGACGAATGCGTGAAGCACAAAGCATCTTCCTTAAAGCACAAAG
AAGAGAGATACTACACTGATGCTGCATCTAGAAAACACCTTTAAGTTGCCTTTCCTCTTT
GTAGTACGTGTCCAGGCAGGTGAGGAGAAGCGTGGAAGGTCTAAGGAGTTCTGTTCTGGC
TCGAGGACGCGCCGCAGAGGCCCTGGCTTGGGGCTGCGCTCTGGCTGTGAGCAAGAAAGG
GTGGTGTTGAGGACGCACTTTTGTGATTTGACAGCATGCAGCAAGGATCCAGGAAGAGTC
AGGTTCCTTCTTTGGTCTCTTTATTCCTCCTCATGCTTAAGATGGATGATTGCGTGAAAG
AGACATCACGTAAGAGATCCTTTCATTAAGATGTCTAATCTGTTTTAAGTCTTTGCAAAA
TAAGCCAGTTATAAAATAGGGCTTGGTTTGTTTAGACTAAAGGATGTTTTCCCAGAATAT
TCTACAGAAGCGCTATAATATTTATGAAATTAAAATGCCTACCAGCTCATTTCAGAGTTG
CAGGAATGGCTGAGCTACAGGTGGACATAGAGGCTGCTGCCCACGGGGCCACTTAGCCCA
GGAAAGCTGACAGATGAAGCAGCGGGGAGGATGTGGGGGTTCAAGGCCGGGAGATGGACA
CGGGGCACACCCTGGGGCGGGGGACCGACACACCGCAGGGCAGGCCCTCACCTGGGGAAC
AGCGTGAGCCCTGTTGGACTGTGTTGGAAGCTGCCGTTTGCTTTTCTCCTTTACTCCAAG
CAGAAATCAAGGGATTCCCTAACCATCTGTATTCGCTGAGATGCAAGCTCACGGTGAGAG
GAGACTGGTTCTGTTGGCCAGTCAGGCGTTTCCCGCCCCGTCTGGTCATCCCCGTTGCTC
TGACCCCTGACTAGGGACCTGTGTGCACCTCCAAGCGGTTTTCTCTTCACAAATACGAAA
GTAACACTAAGAAGGCTTAGTACTACGCTTTTTATGAGAGGTCCTCTGAAATACTGACTT
GCTTTCCGGTCTGTTTCCCATGAGCGGTGTGTACACTACTGTATGATACCCTTGAGCTTT
ATGATCTTGTAAACCAGGCTCCTCTGAAGAGACTTTGGTGAGATGAACGTGAGGTAAAAA
TGTCATTCGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCCGAGTGTTACAAATTCAGTATTATTTACAAAGACTCTTGTTTCGGTCCTTTCGGAT
GGCTTGTCCTGTCAGCAGACGAATGCGTGAAGCACAAAGCATCTTCCTTAAAGCACAAAG
AAGAGAGATACTACACTGATGCTGCATCTAGAAAACACCTTTAAGTTGCCTTTCCTCTTT
GTAGTACGTGTCCAGGCAGGTGAGGAGAAGCGTGGAAGGTCTAAGGAGTTCTGTTCTGGC
TCGAGGACGCGCCGCAGAGGCCCTGGCTTGGGGCTGCGCTCTGGCTGTGAGCAAGAAAGG
GTGGTGTTGAGGACGCACTTTTGTGATTTGACAGCATGCAGCAAGGATCCAGGAAGAGTC
AGGTTCCTTCTTTGGTCTCTTTATTCCTCCTCATGCTTAAGATGGATGATTGCGTGAAAG
AGACATCACGTAAGAGATCCTTTCATTAAGATGTCTAATCTGTTTTAAGTCTTTGCAAAA
TAAGCCAGTTATAAAATAGGGCTTGGTTTGTTTAGACTAAAGGATGTTTTCCCAGAATAT
TCTACAGAAGCGCTATAATATTTATGAAATTAAAATGCCTACCAGCTCATTTCAGAGTTG
CAGGAATGGCTGAGCTACAGGTGGACATAGAGGCTGCTGCCCACGGGGCCACTTAGCCCA
GGAAAGCTGACAGATGAAGCAGCGGGGAGGATGTGGGGGTTCAAGGCCGGGAGATGGACA
CGGGGCACACCCTGGGGCGGGGGACCGACACACCGCAGGGCAGGCCCTCACCTGGGGAAC
AGCGTGAGCCCTGTTGGACTGTGTTGGAAGCTGCCGTTTGCTTTTCTCCTTTACTCCAAG
CAGAAATCAAGGGATTCCCTAACCATCTGTATTCGCTGAGATGCAAGCTCACGGTGAGAG
GAGACTGGTTCTGTTGGCCAGTCAGGCGTTTCCCGCCCCGTCTGGTCATCCCCGTTGCTC
TGACCCCTGACTAGGGACCTGTGTGCACCTCCAAGCGGTTTTCTCTTCACAAATACGAAA
GTAACACTAAGAAGGCTTAGTACTACGCTTTTTATGAGAGGTCCTCTGAAATACTGACTT
GCTTTCCGGTCTGTTTCCCATGAGCGGTGTGTACACTACTGTATGATACCCTTGAGCTTT
ATGATCTTGTAAACCAGGCTCCTCTGAAGAGACTTTGGTGAGATGAACGTGAGGTAAAAA
TGTCATTCGCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               411-521, - strand, RNAz p=0.99279

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               411-521, - strand, RNAz p=0.99279

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1212, gnl|bosTau2|chr25 (5325310-5324084)
               

               
               2-1212, gnl|Hg17|chr11 (111101462-111102842)
               

               
               2-1212, gnl|Mm7|chr9 (50872718-50871392)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1212, gnl|bosTau2|chr25 (5325310-5324084)
               

               
               2-1212, gnl|Hg17|chr11 (111101462-111102842)
               

               
               2-1212, gnl|Mm7|chr9 (50872718-50871392)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nbm (0.198649)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               cly (0.120642)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.198649)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               cly (0.120642)

	2-1212, gnl\|bosTau2\|chr25 (5325310-5324084)
	2-1212, gnl\|Hg17\|chr11 (111101462-111102842)
	2-1212, gnl\|Mm7\|chr9 (50872718-50871392)