Non-Coding RNA Search

Ss1.1-Pig4-TMW8035B13.5

Sequence:


               
               GGTACTGACCCCTGAGACTGGCAGTCGCCTTCACCTGAGAACAGGTGACAGACCTCTTCG
GACAGTGCCCTGGGGTACAGAGTGTCCTCAGGGCTCCAAAGATGTCGCCGGTGGAACCGA
GAGACATACTGCGGTGGAGACCAGGGGCAGGAAACTCAAGAACCCACCGAGAGCAGCAGC
CCTGGGCCAGGGAAGGCGGGCTCTTCCCGCACATCTTCCCCTGAGACTTCTGGTTTGGGG
CCGTTGGTTTTTCGAGGACCTGGCGTCTCTTTTAAATGTAATGACTACTTTGACTTTACC
CTAGATGTTGCTGGTCGTTTACTGAGCTGTGTATATCCGGACAGTTTCATATAGGGCTTA
GAAATCTTAAGGACAAGGAAAATGAACTTTTATCTCCCATGTGAAGTGGTAGTGCTGTGC
CTTTTCCCCCCAGATCATGCTTTAATGATTTCTTTTCTGTAGAAACCAACAGTTTTCCAT
TTATGTCGATGCTAAATCCAAAGTCACTTCAGAGTCTGTTTCCACCATGTGGGAATTACA
TCCTTAATTTCCTTAGAGTTCTGACTTGTAATGAAATGTTCAAGTATTACAGCAATATTC
AAAAAACCACAGATGTGTTAACCATTTAAGCAGATCATCTGCCAAACACGTGATATTACT
AGAAAAACTTAACCCTTACAATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTACTGACCCCTGAGACTGGCAGTCGCCTTCACCTGAGAACAGGTGACAGACCTCTTCG
GACAGTGCCCTGGGGTACAGAGTGTCCTCAGGGCTCCAAAGATGTCGCCGGTGGAACCGA
GAGACATACTGCGGTGGAGACCAGGGGCAGGAAACTCAAGAACCCACCGAGAGCAGCAGC
CCTGGGCCAGGGAAGGCGGGCTCTTCCCGCACATCTTCCCCTGAGACTTCTGGTTTGGGG
CCGTTGGTTTTTCGAGGACCTGGCGTCTCTTTTAAATGTAATGACTACTTTGACTTTACC
CTAGATGTTGCTGGTCGTTTACTGAGCTGTGTATATCCGGACAGTTTCATATAGGGCTTA
GAAATCTTAAGGACAAGGAAAATGAACTTTTATCTCCCATGTGAAGTGGTAGTGCTGTGC
CTTTTCCCCCCAGATCATGCTTTAATGATTTCTTTTCTGTAGAAACCAACAGTTTTCCAT
TTATGTCGATGCTAAATCCAAAGTCACTTCAGAGTCTGTTTCCACCATGTGGGAATTACA
TCCTTAATTTCCTTAGAGTTCTGACTTGTAATGAAATGTTCAAGTATTACAGCAATATTC
AAAAAACCACAGATGTGTTAACCATTTAAGCAGATCATCTGCCAAACACGTGATATTACT
AGAAAAACTTAACCCTTACAATTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               147-264, + strand, RNAz p=0.882231

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               147-264, + strand, RNAz p=0.882231

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_015191, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015191, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-684, gnl|bosTau2|chr25 (5326092-5325397)
               

               
               1-684, gnl|Hg17|chr11 (111100674-111101373)
               

               
               1-684, gnl|Mm7|chr9 (50873384-50872789)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr25 (5326092-5325397)
               

               
               1-684, gnl|Hg17|chr11 (111100674-111101373)
               

               
               1-684, gnl|Mm7|chr9 (50873384-50872789)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	1-684, gnl\|bosTau2\|chr25 (5326092-5325397)
	1-684, gnl\|Hg17\|chr11 (111100674-111101373)
	1-684, gnl\|Mm7\|chr9 (50873384-50872789)