Non-Coding RNA Search

Ss1.1-Pig4-TMW8035B18.5.5

Sequence:


               
               AGCTCCACAAGTCACAACCTGACTGCAGAGACAGGCCGGGTGGAGGGTTCCGCGCTCTGC
AAGTTGTGCCTTGCGCGCAAACGGATGGTGTCCCCGGGCCTGGAGAGTCCCGGCTCAGAG
CCCAGTGCAGAGCGGCAGCCGAGAGGAGGTGGAGATGGCGTCCCAGCCGCCTCCTCCCCC
TAAACCCTGGGAGACCCGCCGGATTCCGGGGGCCGGGCCGGGACCGGGACCTGGCCCCAC
TTTCCAATCTGCTGATTTAGGCCCCACTATATTGACAAGACCTGGACAACCAACACTGAG
CAGAGTGCCACCACCTATTCTTCCAAGGCCATCACAGCAGACAGGAAGCAGCAATGTGAA
CACTTTCAGACCTGCTTACAGTTCATTTTCTTCTGGATATGGTGCCTTTGGAAATTCATA
TTATGGAAGCTATAGCCCTTATAGTTATGGATATAATGGGTTGGGCTATAACCGCCTCCG
TATAGATGATCTTCCGCCTAGTAGATTTGTTCAGCAAGCTGAAGAAAGCAGCAGAGGTGC
ATTTCAGTCCATTGAAAGTATTGTACATGCATTTGCCTCTGTCAGTATGATGATGGATGC
TACCTTTTCAGCTGTCTATAACAGTTTCAGGGCTGTATTGGATGTAGCAAACCACTTTTC
CCGATTAAAAATACACTTCACAAAGGTTTTTTCAGCTTTTGCACTAGTTAGGACTATAAG
GTATCTTTATAGACGGTTACAGTGGATGATGGGTTTAAGAAGAGGCTCTGAGAATGAAGA
CCTATGGGCAGAAAGTGAAAGGACTGTGGCTTGCCTTGGTGCTGAGGACAGAGCAGCTAA
CTCAGCAAAATCTTGGCCAATATTCTTATTCTTTGCTGTTATCCTTGGTGGTCCTTACCT
CATCTGGAAATTGCTGTCTACTTACAGTGATGAAGTAACAGACAGTACCAACTGGGCGAG
TGGTGAGGATGACCATGTAGTTGCTAGAGCAGAATACGATTTTGTTGCTGTATCTGAAGA
AGAAATTTCTTTCCGGGCTGGCGATATGCTAAACCTAGCTCTCAAAGAACAGCAACCCAG
AGTGCGTGGCTGGCTTCTGGCTAGTCTTGATGGTCAAACAACAGGACTTATACCTGCTAA
TTATGTCAAAATTCTTGGTAAAAGAAGAGGTAGAAAAACGGTGGAATCCAGTAAAATTTC
CAAGCAGCAGCAGTCTTTTACCAACACAACACTAACTAAAGGAGCCACAGCTGCCGATTC
TTTGGAAGAACAGGAAGCCGCCTTTGAATCTGTCTTCGTTGAAACTACTAAGGTTACAGT
TGCACCTGATTCCAGTGGGAAAAATGGAGATAAACAAGATCTTTGATATATTTCATGTTT
GCCTGCAGTTGAACTATAATTTGGAATACTTTTTAAAAATTAATTCCGCAAAGAAATCTA
CAATCCAATGAAAACATTTGTTAATGGCTATTCCAGATGTTTTGCTGCTAGAAATTATTA
AAGCTGTACACTAGTATGTTGGTCTAGTGACCTGGTTACATTTTATGAGTTATTGGACCA
TGAGGATATTTGTTTCACCCAGATTTAAGATTATGGAGACTATCATTGTCATCTTATTTA
AAACCCTGTGTTTATTGAAATAGTAAGACTGATGAACTATAGAATACACAATTTGTTACA
GTAGGGATCATTAATGAGTTTTTAAATTCTAGATTAATTGACCTGAAATCCTCAGTAATT
GACTGACAATATATAAATATAAGAACAGGCAAAAAGGTAAAATTTTTTTACAACTTCAAT
TAAACTGAATAATAAAAATTTTCTGATGTGTATTAAATCCAGTGTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTCCACAAGTCACAACCTGACTGCAGAGACAGGCCGGGTGGAGGGTTCCGCGCTCTGC
AAGTTGTGCCTTGCGCGCAAACGGATGGTGTCCCCGGGCCTGGAGAGTCCCGGCTCAGAG
CCCAGTGCAGAGCGGCAGCCGAGAGGAGGTGGAGATGGCGTCCCAGCCGCCTCCTCCCCC
TAAACCCTGGGAGACCCGCCGGATTCCGGGGGCCGGGCCGGGACCGGGACCTGGCCCCAC
TTTCCAATCTGCTGATTTAGGCCCCACTATATTGACAAGACCTGGACAACCAACACTGAG
CAGAGTGCCACCACCTATTCTTCCAAGGCCATCACAGCAGACAGGAAGCAGCAATGTGAA
CACTTTCAGACCTGCTTACAGTTCATTTTCTTCTGGATATGGTGCCTTTGGAAATTCATA
TTATGGAAGCTATAGCCCTTATAGTTATGGATATAATGGGTTGGGCTATAACCGCCTCCG
TATAGATGATCTTCCGCCTAGTAGATTTGTTCAGCAAGCTGAAGAAAGCAGCAGAGGTGC
ATTTCAGTCCATTGAAAGTATTGTACATGCATTTGCCTCTGTCAGTATGATGATGGATGC
TACCTTTTCAGCTGTCTATAACAGTTTCAGGGCTGTATTGGATGTAGCAAACCACTTTTC
CCGATTAAAAATACACTTCACAAAGGTTTTTTCAGCTTTTGCACTAGTTAGGACTATAAG
GTATCTTTATAGACGGTTACAGTGGATGATGGGTTTAAGAAGAGGCTCTGAGAATGAAGA
CCTATGGGCAGAAAGTGAAAGGACTGTGGCTTGCCTTGGTGCTGAGGACAGAGCAGCTAA
CTCAGCAAAATCTTGGCCAATATTCTTATTCTTTGCTGTTATCCTTGGTGGTCCTTACCT
CATCTGGAAATTGCTGTCTACTTACAGTGATGAAGTAACAGACAGTACCAACTGGGCGAG
TGGTGAGGATGACCATGTAGTTGCTAGAGCAGAATACGATTTTGTTGCTGTATCTGAAGA
AGAAATTTCTTTCCGGGCTGGCGATATGCTAAACCTAGCTCTCAAAGAACAGCAACCCAG
AGTGCGTGGCTGGCTTCTGGCTAGTCTTGATGGTCAAACAACAGGACTTATACCTGCTAA
TTATGTCAAAATTCTTGGTAAAAGAAGAGGTAGAAAAACGGTGGAATCCAGTAAAATTTC
CAAGCAGCAGCAGTCTTTTACCAACACAACACTAACTAAAGGAGCCACAGCTGCCGATTC
TTTGGAAGAACAGGAAGCCGCCTTTGAATCTGTCTTCGTTGAAACTACTAAGGTTACAGT
TGCACCTGATTCCAGTGGGAAAAATGGAGATAAACAAGATCTTTGATATATTTCATGTTT
GCCTGCAGTTGAACTATAATTTGGAATACTTTTTAAAAATTAATTCCGCAAAGAAATCTA
CAATCCAATGAAAACATTTGTTAATGGCTATTCCAGATGTTTTGCTGCTAGAAATTATTA
AAGCTGTACACTAGTATGTTGGTCTAGTGACCTGGTTACATTTTATGAGTTATTGGACCA
TGAGGATATTTGTTTCACCCAGATTTAAGATTATGGAGACTATCATTGTCATCTTATTTA
AAACCCTGTGTTTATTGAAATAGTAAGACTGATGAACTATAGAATACACAATTTGTTACA
GTAGGGATCATTAATGAGTTTTTAAATTCTAGATTAATTGACCTGAAATCCTCAGTAATT
GACTGACAATATATAAATATAAGAACAGGCAAAAAGGTAAAATTTTTTTACAACTTCAAT
TAAACTGAATAATAAAAATTTTCTGATGTGTATTAAATCCAGTGTTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26328465|dbj|BAC27971.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26328465|dbj|BAC27971.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               366-525, + strand, RNAz p=0.995453

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               366-525, + strand, RNAz p=0.995453

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-246, gnl|bosTau2|chr11 (30371312-30371079)
               

               
               1-246, gnl|Hg17|chr2 (61156401-61156637)
               

               
               1-246, gnl|Mm7|chr11 (23617991-23617753)
               


               
               247-941, gnl|bosTau2|chr11 (30326138-30326832)
               

               
               247-941, gnl|Hg17|chr2 (61170205-61170899)
               

               
               247-941, gnl|Mm7|chr11 (23608136-23607442)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-246, gnl|bosTau2|chr11 (30371312-30371079)
               

               
               1-246, gnl|Hg17|chr2 (61156401-61156637)
               

               
               1-246, gnl|Mm7|chr11 (23617991-23617753)
               


               
               247-941, gnl|bosTau2|chr11 (30326138-30326832)
               

               
               247-941, gnl|Hg17|chr2 (61170205-61170899)
               

               
               247-941, gnl|Mm7|chr11 (23608136-23607442)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               pro (0.512033)
               

               
               fco (0.471624)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               ece (0.229305)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               fco (0.471624)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               ece (0.229305)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	1-246, gnl\|bosTau2\|chr11 (30371312-30371079)
	1-246, gnl\|Hg17\|chr2 (61156401-61156637)
	1-246, gnl\|Mm7\|chr11 (23617991-23617753)

	247-941, gnl\|bosTau2\|chr11 (30326138-30326832)
	247-941, gnl\|Hg17\|chr2 (61170205-61170899)
	247-941, gnl\|Mm7\|chr11 (23608136-23607442)

	pro (0.512033)
	fco (0.471624)
	cte (0.29274)
	liv (0.292569)
	ece (0.229305)
	mga (0.160205)
	isp (0.150376)
	fat (0.147427)
	ski (0.146735)
	csk (0.140746)
	cst (0.140036)
	nmm (0.132802)
	kid (0.129735)
	tra (0.123092)
	eep (0.122564)
	cty (0.10408)
	eje (0.0988338)