Non-Coding RNA Search

Ss1.1-Pig4-TMW8035C06.3

Sequence:


               
               GCAACCTCTGCCACCTGGCCCCACAGCTCCCCAGTCCCCAGGCCGCGCTCAGGCCGAAGC
CACAGGACCACGGGGCGCAGAGGGCGGCAATGGCAGCTTTCCTGGGGCGGAGCTTGCTGC
CGACCCAGGCGGGAAGGCGGGGGAAGAAGGCTCAGTGGGTGGCGTCCTTGCTGTGAGCCC
TAACCCCAGCGACAAGCCCATGACCCAGCGGGCCCTGACCGTGTTGATGGTGGTGAGTGG
TGCGGTGCTGGTGTACTTCGTCGTCAGGACGGTCAGAATGAGAAGAAGAAACCGAAAGAC
TAGGAGATATGGAGTTCTGGACACTAACATAGAAAACATGGAATTGACACCTTTAGAACA
AGATGATGAGGATGATGATAACACACTGTTTGATGCCAATCATCCTCGAAGATAAGAATG
TGCCTTTTGATGAGAGAACTTCATCTTTCTACAATGAAGAGCAGAATTTCTACATTTAAG
GAATAAGAAGCCACTTTATCAATGGGGGGGTATTTAAGTTACATATATTATGATAACCTT
AATTTGTTGTTGCAATAAATACTCTATCATTTTGTTATGTGTTTGTATAGAAGTGCTCTT
AATGGGCTCAGAGTTGTTGGGAGTAAATTGTACTGTAATATAAGTCTGAAGATTACTTAA
AAGCAGGGTGTTTTCTGATCAGTTTTTCTTTCTTGCTTACCTTATTATTGTAAACTATTT
TATATACTAATCAGTGTTGGGGTTTTTGTTTGGATTTTGTTTTGGGGTTTATTTTTTTGA
CTGGTTAAGGTTTTATTTTTGTTTGGTTGGTTTTGTTTTTTTTCTTTTGGATTATAAATC
CCAACAACGAAGTGGTGTGTAAAAATAATTTAAAAATCTCTTTACCAAGATGTATTTCCC
ATTTTTGTGGGGAAAAGAAGCCAAATTTATTACTTTGCATTTGGGTTTCTTAAATATTAA
AAATGTCTGAGTTGTATGCACAACAATAAATATGGTTTAAAATTCTTTGAAAGTAGTACA
GACAGAATGTGTTTACAAAATAAACCCTAGACTATATAGAATCACATTAACATATGTATT
TTATATGATTTCTAGAAAAATATGTCAAAAAGTGTTCTATTTTAACTTCTTTATTAAATT
ATGATACTCTTGATTAGATATTTCAGAAACCAGTGAATTTCAAAACCATTTATGTACAGT
ATTGTGAGAAACAGAAGTTACTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAACCTCTGCCACCTGGCCCCACAGCTCCCCAGTCCCCAGGCCGCGCTCAGGCCGAAGC
CACAGGACCACGGGGCGCAGAGGGCGGCAATGGCAGCTTTCCTGGGGCGGAGCTTGCTGC
CGACCCAGGCGGGAAGGCGGGGGAAGAAGGCTCAGTGGGTGGCGTCCTTGCTGTGAGCCC
TAACCCCAGCGACAAGCCCATGACCCAGCGGGCCCTGACCGTGTTGATGGTGGTGAGTGG
TGCGGTGCTGGTGTACTTCGTCGTCAGGACGGTCAGAATGAGAAGAAGAAACCGAAAGAC
TAGGAGATATGGAGTTCTGGACACTAACATAGAAAACATGGAATTGACACCTTTAGAACA
AGATGATGAGGATGATGATAACACACTGTTTGATGCCAATCATCCTCGAAGATAAGAATG
TGCCTTTTGATGAGAGAACTTCATCTTTCTACAATGAAGAGCAGAATTTCTACATTTAAG
GAATAAGAAGCCACTTTATCAATGGGGGGGTATTTAAGTTACATATATTATGATAACCTT
AATTTGTTGTTGCAATAAATACTCTATCATTTTGTTATGTGTTTGTATAGAAGTGCTCTT
AATGGGCTCAGAGTTGTTGGGAGTAAATTGTACTGTAATATAAGTCTGAAGATTACTTAA
AAGCAGGGTGTTTTCTGATCAGTTTTTCTTTCTTGCTTACCTTATTATTGTAAACTATTT
TATATACTAATCAGTGTTGGGGTTTTTGTTTGGATTTTGTTTTGGGGTTTATTTTTTTGA
CTGGTTAAGGTTTTATTTTTGTTTGGTTGGTTTTGTTTTTTTTCTTTTGGATTATAAATC
CCAACAACGAAGTGGTGTGTAAAAATAATTTAAAAATCTCTTTACCAAGATGTATTTCCC
ATTTTTGTGGGGAAAAGAAGCCAAATTTATTACTTTGCATTTGGGTTTCTTAAATATTAA
AAATGTCTGAGTTGTATGCACAACAATAAATATGGTTTAAAATTCTTTGAAAGTAGTACA
GACAGAATGTGTTTACAAAATAAACCCTAGACTATATAGAATCACATTAACATATGTATT
TTATATGATTTCTAGAAAAATATGTCAAAAAGTGTTCTATTTTAACTTCTTTATTAAATT
ATGATACTCTTGATTAGATATTTCAGAAACCAGTGAATTTCAAAACCATTTATGTACAGT
ATTGTGAGAAACAGAAGTTACTGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8TBP5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8TBP5_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               405-1209, gnl|bosTau2|chr7 (62870343-62871121)
               

               
               405-1209, gnl|Hg17|chr5 (99949777-99950546)
               

               
               405-1209, gnl|Mm7|chr1 (95183582-95184365)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               405-1209, gnl|bosTau2|chr7 (62870343-62871121)
               

               
               405-1209, gnl|Hg17|chr5 (99949777-99950546)
               

               
               405-1209, gnl|Mm7|chr1 (95183582-95184365)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               tes (0.415628)
               

               
               ste (0.270416)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               ssp (0.13552)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               ste (0.270416)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               ssp (0.13552)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	405-1209, gnl\|bosTau2\|chr7 (62870343-62871121)
	405-1209, gnl\|Hg17\|chr5 (99949777-99950546)
	405-1209, gnl\|Mm7\|chr1 (95183582-95184365)

	tes (0.415628)
	ste (0.270416)
	fcc (0.197785)
	gul (0.177588)
	fco (0.157208)
	tbr (0.154178)
	bfe (0.149858)
	ssp (0.13552)
	eru (0.120048)
	pgl (0.118483)
	spc (0.113366)