Non-Coding RNA Search

Ss1.1-Pig4-TMW8035D02.3.5

Sequence:


               
               ATCAGGCGCCGCAGGCAAGCCGCGGTTTCGAGTTTGGTGTGAGCTAGGAGCGCGGGACCA
TGGCCGCAGCCGATGTAGCTTTGGCGTCATTGGTGACTGGTCTGTACGACGTGCAGGCTT
TCAAATTTGGGAGCTTCGTGCTGAAGAGTGGGCTCTCTTCCCCCGTGTACATCGATCTGC
GGGGCATCGTGTCTCGACCGCGTCTTCTGAGTCAGGTTGCTGAAATTTTATTCCAAACTG
CCCAAAATGCAGGGATCAATTTTGATACTGTGTGTGGAGTACCTTACACAGCTTTACCAT
TGGCTACAGTTATCTGTTCAACCAACCAAATTCCAATGCTTATTAGAAGGAAAGAAGCAA
AGGATTATGGTACCAAGCGTCTTATAGAAGGGGCTGTTAATCCAGGAGAAACCTGTTTGA
TCATTGAAGATGTTGTTACCAGTGGATCTAGTATCTTGGAAACTGTTGAGGTTCTTCAGA
AGGAGGGCTTGAAGGTCACTGATGCCATAGTGGTGCTGGACAGAGAGCAAGGAGGCAGGG
ACAAGTTGCAGGCACACGGGATTCGTCTCCACTCAGTGTGTACATTGTCCAACATGCTGG
AGATCCTTGAGCAACAGAAGAAAATTGATGCTGAGATGGTTGAGAGAGTAAAGAGATTTA
TTCAGGAGAATGTTTTTGTGGTAGCTAATCATAATGGTTCCCTCCCTTCTGCAAAGAAAG
CACCCAAAGAACTAAGCTTTGGTACACGTGCAGAGCTGCCTGGGATCCACCCAGTTGCTT
CGAAGCTCCTCAGGCTCATGCAAAAGAAGGAGACCAATCTGTGTCTGTCTGCTGATATTT
CAGAGTCCCGAGAGCTGTTGCAGCTAGCAGATGCTTTAGGACCGAGCATCTGCATGCTCA
AGACTCACGTAGATATTTTGAATGATTTTACTCCCGATGTGATGAAGGAGTTAACTACTC
TGGCGAAACGCCACGAGTTCTTAATATTTGAAGACCGGAAGTTTGCAGATATAGGAAACA
CAGTAAAAAAGCAGTATGCAGGTGGTGTCTTTAAAATAGCTTCCTGGGCAGATATAGTAA
ATGCTCATGTGGTGCCAGGCTCGGGAGTTGTGAAAGGCCTGCGAGAAGTCGGCCTGCCCC
TGCACCGGGCCTGCTTGCTCATTGCAGAAATGAGTTCTGCTGGCTCCTTGGCCACTGGGA
GCTACACTGAGGCAGCAGTGAGAATGGCTGAGGAGCATTCTGAATTTGTGGTTGGTTTTA
TTTCTGGCTCCCGAGTAAGCATGAAACCAGAATTTCTCCACTTGACTCCAGGAGTTCAAT
TAGAAGCAGGAGGTGATAATCTGGGCCAGCAGTACAACAGCCCACAGGAAGTCATCGGCA
AACGAGGTTCTGATATCATCATCGTGGGTCGGGGCATTTTAATGTCAGCTAATCGTCTGG
AAGCAGCCGAGAAGTACAGAAAAGCTGCCTGGGAAGCTTATTTGAGTAGACTTGCTGTTT
GAGTGTCTCAGATACATTTTTATGAAGGCCTTGAAGATACACAGTCTCCCGAGATGCCAC
TGCCTTGAAATAATAAGCTGCCTATAATACTGCTTGGATTCTTCCATGGGTCCTGGATTG
GCTTCTGGACTTAACCCTGGTCTACAGGAAATATTCAGTGATGTGTGATCACTCTAATCC
ATTCTTTTTCAAACTTTCTTTTGTTGAGATTGATATTGATTAGGCAATCACAGTCCTGTC
TGTGTTAGAATCTTCCATATTTGAAGATCCCCTATCTCTAGATCAGACTTTTGGATTCTT
TTAATTGCCATGAGACAGACATTTTAGGCTATCAAGAGGCTAAAGCCAGTAGAGCATTTC
ATGAGTCCTTTATTCTCTCTAATGTGGTGCTCTAATAATTCTTAAATGCTAGCTTTTCCC
CTCCTCTTCTGCTTCAAAGTTATAGTCCAGGATGTAGATGCTCCTAGCACTGCCGTTGCT
CACTCACCCGAGGGAGCTGGGTGGGGATGCAGGTCATGTAAGTGAGCCCCTGAGCCCCTG
AAGCCAGTATCTGGCTTCCATTTCATAACTCATTTCTTCCCCGAGGCAACAGTGTAGACC
TGTGCTAACCCCAGTCACTGCTTCCTTTCGCCTAATTTCCATTACAAATGGACCAAACTG
TTCCTTCATTTATTTAAAAGGACAGCAATGTCAGTTCTAAAGTTTCATTCAGAGGTTTGC
TCGAGGATCCTACAACATTAACAGTGATGTCAGCCTTCACATTTAGAAATGAAGACAAAG
GAGAGGCTGGGCACGCAGGAAGCCCTCTCACTCTGGGCCCAAGTGCACTTTCTCCTAGAA
ATTCCTCAGAGTTTCTGGGTGATCCCTGGTCTCCAGTATTGATGTCGATTTTTCCCATTT
TTATATTTCTTTGGTCTGTTCAGGAAGCATCAAGAGGGGAGTGAAGGGTGTGGGCTCAGA
TGATCATTTTGAAATGGCCCCACTGAACATCCAAGGCCCTGGGGATCTTGAGCGGGGCCA
CGTGGCAGGTGCATTTGAAAGCTCTCAGTTCCCATTCCACCAGCACCTCCTAGTCTGCTT
TTCCTTCTGCTTGTGCTCATGACGACATATAGTGGCAGGAGCAATTGCCATTTCCTCCAG
ATGACAGCTGTTCCCATCCCTGACTGCCCCACTCTTCAGCTCTCAGCACTCAGAGGGAAG
CTGTTATTTAACTCAGGTGCTTATGTTGGAGGCTCCACTTAATAGCTTCTGCTCTAAAAT
CCAGCTGAGCTTTGGGTGCCAGTGCTGCTTCTCCAGAGAAGTTCCCTCTGGGAAAGGCAA
GTTGTCACGGAAGGAAGGAAGTGGAAGAGGTGTGGCCTTGGGGCTACTCAGGAGGAGTGG
AAAGTTAGGGAGGGAGTGGCAGAAGTTTTTCTAATAAAAACTTATAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAGGCGCCGCAGGCAAGCCGCGGTTTCGAGTTTGGTGTGAGCTAGGAGCGCGGGACCA
TGGCCGCAGCCGATGTAGCTTTGGCGTCATTGGTGACTGGTCTGTACGACGTGCAGGCTT
TCAAATTTGGGAGCTTCGTGCTGAAGAGTGGGCTCTCTTCCCCCGTGTACATCGATCTGC
GGGGCATCGTGTCTCGACCGCGTCTTCTGAGTCAGGTTGCTGAAATTTTATTCCAAACTG
CCCAAAATGCAGGGATCAATTTTGATACTGTGTGTGGAGTACCTTACACAGCTTTACCAT
TGGCTACAGTTATCTGTTCAACCAACCAAATTCCAATGCTTATTAGAAGGAAAGAAGCAA
AGGATTATGGTACCAAGCGTCTTATAGAAGGGGCTGTTAATCCAGGAGAAACCTGTTTGA
TCATTGAAGATGTTGTTACCAGTGGATCTAGTATCTTGGAAACTGTTGAGGTTCTTCAGA
AGGAGGGCTTGAAGGTCACTGATGCCATAGTGGTGCTGGACAGAGAGCAAGGAGGCAGGG
ACAAGTTGCAGGCACACGGGATTCGTCTCCACTCAGTGTGTACATTGTCCAACATGCTGG
AGATCCTTGAGCAACAGAAGAAAATTGATGCTGAGATGGTTGAGAGAGTAAAGAGATTTA
TTCAGGAGAATGTTTTTGTGGTAGCTAATCATAATGGTTCCCTCCCTTCTGCAAAGAAAG
CACCCAAAGAACTAAGCTTTGGTACACGTGCAGAGCTGCCTGGGATCCACCCAGTTGCTT
CGAAGCTCCTCAGGCTCATGCAAAAGAAGGAGACCAATCTGTGTCTGTCTGCTGATATTT
CAGAGTCCCGAGAGCTGTTGCAGCTAGCAGATGCTTTAGGACCGAGCATCTGCATGCTCA
AGACTCACGTAGATATTTTGAATGATTTTACTCCCGATGTGATGAAGGAGTTAACTACTC
TGGCGAAACGCCACGAGTTCTTAATATTTGAAGACCGGAAGTTTGCAGATATAGGAAACA
CAGTAAAAAAGCAGTATGCAGGTGGTGTCTTTAAAATAGCTTCCTGGGCAGATATAGTAA
ATGCTCATGTGGTGCCAGGCTCGGGAGTTGTGAAAGGCCTGCGAGAAGTCGGCCTGCCCC
TGCACCGGGCCTGCTTGCTCATTGCAGAAATGAGTTCTGCTGGCTCCTTGGCCACTGGGA
GCTACACTGAGGCAGCAGTGAGAATGGCTGAGGAGCATTCTGAATTTGTGGTTGGTTTTA
TTTCTGGCTCCCGAGTAAGCATGAAACCAGAATTTCTCCACTTGACTCCAGGAGTTCAAT
TAGAAGCAGGAGGTGATAATCTGGGCCAGCAGTACAACAGCCCACAGGAAGTCATCGGCA
AACGAGGTTCTGATATCATCATCGTGGGTCGGGGCATTTTAATGTCAGCTAATCGTCTGG
AAGCAGCCGAGAAGTACAGAAAAGCTGCCTGGGAAGCTTATTTGAGTAGACTTGCTGTTT
GAGTGTCTCAGATACATTTTTATGAAGGCCTTGAAGATACACAGTCTCCCGAGATGCCAC
TGCCTTGAAATAATAAGCTGCCTATAATACTGCTTGGATTCTTCCATGGGTCCTGGATTG
GCTTCTGGACTTAACCCTGGTCTACAGGAAATATTCAGTGATGTGTGATCACTCTAATCC
ATTCTTTTTCAAACTTTCTTTTGTTGAGATTGATATTGATTAGGCAATCACAGTCCTGTC
TGTGTTAGAATCTTCCATATTTGAAGATCCCCTATCTCTAGATCAGACTTTTGGATTCTT
TTAATTGCCATGAGACAGACATTTTAGGCTATCAAGAGGCTAAAGCCAGTAGAGCATTTC
ATGAGTCCTTTATTCTCTCTAATGTGGTGCTCTAATAATTCTTAAATGCTAGCTTTTCCC
CTCCTCTTCTGCTTCAAAGTTATAGTCCAGGATGTAGATGCTCCTAGCACTGCCGTTGCT
CACTCACCCGAGGGAGCTGGGTGGGGATGCAGGTCATGTAAGTGAGCCCCTGAGCCCCTG
AAGCCAGTATCTGGCTTCCATTTCATAACTCATTTCTTCCCCGAGGCAACAGTGTAGACC
TGTGCTAACCCCAGTCACTGCTTCCTTTCGCCTAATTTCCATTACAAATGGACCAAACTG
TTCCTTCATTTATTTAAAAGGACAGCAATGTCAGTTCTAAAGTTTCATTCAGAGGTTTGC
TCGAGGATCCTACAACATTAACAGTGATGTCAGCCTTCACATTTAGAAATGAAGACAAAG
GAGAGGCTGGGCACGCAGGAAGCCCTCTCACTCTGGGCCCAAGTGCACTTTCTCCTAGAA
ATTCCTCAGAGTTTCTGGGTGATCCCTGGTCTCCAGTATTGATGTCGATTTTTCCCATTT
TTATATTTCTTTGGTCTGTTCAGGAAGCATCAAGAGGGGAGTGAAGGGTGTGGGCTCAGA
TGATCATTTTGAAATGGCCCCACTGAACATCCAAGGCCCTGGGGATCTTGAGCGGGGCCA
CGTGGCAGGTGCATTTGAAAGCTCTCAGTTCCCATTCCACCAGCACCTCCTAGTCTGCTT
TTCCTTCTGCTTGTGCTCATGACGACATATAGTGGCAGGAGCAATTGCCATTTCCTCCAG
ATGACAGCTGTTCCCATCCCTGACTGCCCCACTCTTCAGCTCTCAGCACTCAGAGGGAAG
CTGTTATTTAACTCAGGTGCTTATGTTGGAGGCTCCACTTAATAGCTTCTGCTCTAAAAT
CCAGCTGAGCTTTGGGTGCCAGTGCTGCTTCTCCAGAGAAGTTCCCTCTGGGAAAGGCAA
GTTGTCACGGAAGGAAGGAAGTGGAAGAGGTGTGGCCTTGGGGCTACTCAGGAGGAGTGG
AAAGTTAGGGAGGGAGTGGCAGAAGTTTTTCTAATAAAAACTTATAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50897466|gb|AAT85801.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50897466|gb|AAT85801.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               808-2889, + strand, RNAz p=0.962387

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               808-2889, + strand, RNAz p=0.962387

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               1-217, gnl|bosTau2|chr1 (38426841-38426626)
               

               
               1-217, gnl|Hg17|chr3 (125931949-125932166)
               

               
               1-217, gnl|Mm7|chr16 (33641659-33641455)
               


               
               369-1043, gnl|bosTau2|chr1 (38406869-38406195)
               

               
               369-1043, gnl|Hg17|chr3 (125939104-125939778)
               

               
               369-1043, gnl|Mm7|chr16 (33636872-33636198)
               


               
               1331-1918, gnl|bosTau2|chr1 (38377374-38376781)
               

               
               1331-1918, gnl|Hg17|chr3 (125945450-125946364)
               


               
               2719-2889, gnl|bosTau2|chr1 (38376264-38376087)
               

               
               2719-2889, gnl|Hg17|chr3 (125947076-125947274)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-217, gnl|bosTau2|chr1 (38426841-38426626)
               

               
               1-217, gnl|Hg17|chr3 (125931949-125932166)
               

               
               1-217, gnl|Mm7|chr16 (33641659-33641455)
               


               
               369-1043, gnl|bosTau2|chr1 (38406869-38406195)
               

               
               369-1043, gnl|Hg17|chr3 (125939104-125939778)
               

               
               369-1043, gnl|Mm7|chr16 (33636872-33636198)
               


               
               1331-1918, gnl|bosTau2|chr1 (38377374-38376781)
               

               
               1331-1918, gnl|Hg17|chr3 (125945450-125946364)
               


               
               2719-2889, gnl|bosTau2|chr1 (38376264-38376087)
               

               
               2719-2889, gnl|Hg17|chr3 (125947076-125947274)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	1-217, gnl\|bosTau2\|chr1 (38426841-38426626)
	1-217, gnl\|Hg17\|chr3 (125931949-125932166)
	1-217, gnl\|Mm7\|chr16 (33641659-33641455)

	369-1043, gnl\|bosTau2\|chr1 (38406869-38406195)
	369-1043, gnl\|Hg17\|chr3 (125939104-125939778)
	369-1043, gnl\|Mm7\|chr16 (33636872-33636198)

	1331-1918, gnl\|bosTau2\|chr1 (38377374-38376781)
	1331-1918, gnl\|Hg17\|chr3 (125945450-125946364)

	2719-2889, gnl\|bosTau2\|chr1 (38376264-38376087)
	2719-2889, gnl\|Hg17\|chr3 (125947076-125947274)

	ill (0.175593)
	fhi (0.169578)
	nje (0.16592)
	cje (0.165235)
	spl (0.143184)
	pla (0.133672)
	cty (0.10408)
	eje (0.0988338)