Ss1.1-Pig4-TMW8035D04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCGGTACTGGAGGCCAGACTGCGCATGCGTTTCAGTGGCGTTAGCGGCAGACCGGTCTG GCAGTTCCTTCCTCGGAAGGAGAGATTCCTCTGCCATGGAGTCCTACGATGTGATCGCCA ACCAGCCTGTCGTGATCGACAACGGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATC AAATCCCCAAGTACTGTTTTCCAAACTATGTGGGCAGACCCAAGCACGTTCGTGTCATGG CAGGCGCCCTCGAAGGTGACATCTTCATTGGCCCCAAAGCTGAGGAGCACCGAGGGCTGC TCTCCATCCGCTACCCCATGGAGCACGGCATTGTCAAGGACTGGAACGACATGGAGCGCA TCTGGCAGTACGTCTATTCCAAGGACCAGCTGCAGACTTTCTCAGAGGAGCATCCTGTGC TCCTGACGGAGGCACCTCTAAACCCACGGAAAAACCGAGAACGAGCTGCTGAAGTTTTCT TCGAGACCTTCAATGTGCCAGCCCTTTTCATCTCCATGCAAGCTGTGCTCAGCCTTTATG CCACTGGCAGGACCACGGGTGTGGTGCTGGATTCTGGGGATGGCGTCACCCACGCCGTGC CCATTTACGAGGGCTTCGCCATGCCCCACTCAATCATGCGCATCGACATCGCCGGCCGCG ACGTCTCTCGCTTCCTTCGCCTTTACCTGCGCAAGGAGGGCTATGATTTCCACTCATCCT CCGAGTTTGAGATTGTCAAGGCCATAAAAGAAAGAGCCTGCTACCTATCCATAAACCCCC AGAAGGATGAGACACTCGAGACGGAGAAAGCTCAGTATTACCTGCCTGACGGCAGCACCA TTGAGATTGGTCCTTCCCGATTCCGGGCCCCTGAGCTGCTGTTCAGGCCAGACCTGATCG GCGAGGAGAGCGAGGGCATCCACGAGGTGCTGGTGTTCGCCATCCAGAAGTCTGACATGG ACCTGCGGCGCACGCTCTTCTCTAACATCGTCCTCTCGGGAGGCTCCACCCTGTTCAAAG GTTTTGGTGACAGGCTACTGAGTGAAGTGAAGAAACTGGCTCCAAAAGACGTGAAGATCA GGATATCGGCACCGCAGGAGAGACTGTATTCCACGTGGATCGGGGGCTCCATCCTTGCCT CTCTGGACACCTTTAAGAAAATGTGGGTCTCTAAGAAGGAATACGAGGAAGATGGTGCCC GATCCATCCATAGGAAAACCTTCTAATATTGGGACATCATCTTCACCTCTCTCTGAAGTT AACTCCACTTTAAAACTCGCTTTCTTGAGTCGAGGAACTGCCTGTGTGTATGAGTGTGTG TGTGTGGGTGTGTGGGTACGAGTGTGTGCGCATACAAGAGTGCCGTGTGGCCCGGGGATC CCAGGGATCCCGGGGCCCAGAAAGGACGATGAACTACCCACGATGGTGACGGCCTGAGAC CTGGGGTTGACCACTAACTGGCCCCTGACAGGGAAGAGTGGCTGCCAGAGGGCCCCACTC CGTCAGCTGGGCCTTTGTCTGGCTGTGTAGGGCTGTGTTGACTACCATGGGGAGACAGAG GGAGGTAAGCCCAACCCCTGGGAGACCTTGCTGCTGCCCATCCTAGGCTGGGCCAGTCCC ACCCCCACCCCACCCAGGGTGCCCTGCAGCCCGAGGCAGCTGCTGCCTCCCCTTGCTCAT CATTCTGCTCTCAATGCCTCTGGATCATGGATGGAGGCCTGGGGCCAGGGTTGAGTTCTG TCTGGTTTTGTTGCAGTTTGGGTTTAGAAGGCTGGAGAAGCACTCCAGCAGTTATTACTG AGACTTTGGGGTCAGAAGGGGGCAGGATGCCCTCAACTTCACCTGGGGACCAGGACCACA CTGGGCATTTGAGGTGGGCAGGAGTAGTGCTGCTTCTGCTGGTGGCAAAGTTGTTGCTCC AACTCCAAGCCCACTTCCAGTGGGTCTCGGGAGAGTTTCAGGAGCCTGTTGGCCCCAGGC CCTGTCACTTGCTTTCCATCCATCCTTGGGCAGTGCCATCTTCAGTTTTATTTATTGAAG TGTTTGTTCAGTACAGGGCCTGGGGAGAGGGGGCTCATTGCCTCCCACCCACCAGGCACC CTGTTCACACTAATGTTTACAGCACCTAAGCTTAGCACAGTGTCCAGGGCCCCGCCACTC CCTGCTCACGGTGAACTGACAGTATCCATAGGCCTCAGGACCACATGGGGTCAGAGACTA CACTCAAAGTCACTCCAGCCTCTTTCTTTCTCCCTCTTCCACTTGCTCACTGCCCTGGAA TCAACAGACTGGTTGCTGGTTGGATTTTCTGAAGCAAGAGCTAGAATCACCCTTTAGCAG AGGCTCCGACCCAAGGAAAGGTGTTGGGGATCCAGCCTCCTTAGGAATGGAGAAAGAGCT GCAATTAACCAAGTGGCCTTTTCCCACTCTAGCTGACCCGGTGGGGGGGGGACTAGGTTG CAGAGGTGAGCAGGCTCCCCCCCAAGGCCGATTTATGCCATTCTTGTCTTTGGACTTGCT TGCTTAGGGAGGGAGGGGTCAGACCAGAGGGCCAGGAGCTGATGGGATCAGGCTCACCTC CTCTGGTCCAGTAGGACCAGGTGCCTTCACTGGACTAGGCTGGCCTGGCAGTGGTCCCAA GGCCCTTCAGCTCGGCTGGTACAAAGCTGAGGCCAGCAGATCTTCCCCGGCACCCTCACC TGTGACACTAAGACCTGCCCTGATCCCAGATTCCAGGCAGTATTCTCCCCCATGCCGTCC AACGACCAAAGGCCCTGCCAGGTGTGGGCCGCAGCAGCAGGTGTGTGTGAAAGCGATGTG GCGACCCGCGGACTGCAGTGTGCTTAACCAGCTCACCTCCCTCCTCTTAGCCCAAGCCTG TCCCTCGCACAGCCTCGCACAAACCACGTTGCCTGGTGGGGCCCAGTGTACTTAAATAAA GTTGTTCCAATAGACAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCGGTACTGGAGGCCAGACTGCGCATGCGTTTCAGTGGCGTTAGCGGCAGACCGGTCTG GCAGTTCCTTCCTCGGAAGGAGAGATTCCTCTGCCATGGAGTCCTACGATGTGATCGCCA ACCAGCCTGTCGTGATCGACAACGGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATC AAATCCCCAAGTACTGTTTTCCAAACTATGTGGGCAGACCCAAGCACGTTCGTGTCATGG CAGGCGCCCTCGAAGGTGACATCTTCATTGGCCCCAAAGCTGAGGAGCACCGAGGGCTGC TCTCCATCCGCTACCCCATGGAGCACGGCATTGTCAAGGACTGGAACGACATGGAGCGCA TCTGGCAGTACGTCTATTCCAAGGACCAGCTGCAGACTTTCTCAGAGGAGCATCCTGTGC TCCTGACGGAGGCACCTCTAAACCCACGGAAAAACCGAGAACGAGCTGCTGAAGTTTTCT TCGAGACCTTCAATGTGCCAGCCCTTTTCATCTCCATGCAAGCTGTGCTCAGCCTTTATG CCACTGGCAGGACCACGGGTGTGGTGCTGGATTCTGGGGATGGCGTCACCCACGCCGTGC CCATTTACGAGGGCTTCGCCATGCCCCACTCAATCATGCGCATCGACATCGCCGGCCGCG ACGTCTCTCGCTTCCTTCGCCTTTACCTGCGCAAGGAGGGCTATGATTTCCACTCATCCT CCGAGTTTGAGATTGTCAAGGCCATAAAAGAAAGAGCCTGCTACCTATCCATAAACCCCC AGAAGGATGAGACACTCGAGACGGAGAAAGCTCAGTATTACCTGCCTGACGGCAGCACCA TTGAGATTGGTCCTTCCCGATTCCGGGCCCCTGAGCTGCTGTTCAGGCCAGACCTGATCG GCGAGGAGAGCGAGGGCATCCACGAGGTGCTGGTGTTCGCCATCCAGAAGTCTGACATGG ACCTGCGGCGCACGCTCTTCTCTAACATCGTCCTCTCGGGAGGCTCCACCCTGTTCAAAG GTTTTGGTGACAGGCTACTGAGTGAAGTGAAGAAACTGGCTCCAAAAGACGTGAAGATCA GGATATCGGCACCGCAGGAGAGACTGTATTCCACGTGGATCGGGGGCTCCATCCTTGCCT CTCTGGACACCTTTAAGAAAATGTGGGTCTCTAAGAAGGAATACGAGGAAGATGGTGCCC GATCCATCCATAGGAAAACCTTCTAATATTGGGACATCATCTTCACCTCTCTCTGAAGTT AACTCCACTTTAAAACTCGCTTTCTTGAGTCGAGGAACTGCCTGTGTGTATGAGTGTGTG TGTGTGGGTGTGTGGGTACGAGTGTGTGCGCATACAAGAGTGCCGTGTGGCCCGGGGATC CCAGGGATCCCGGGGCCCAGAAAGGACGATGAACTACCCACGATGGTGACGGCCTGAGAC CTGGGGTTGACCACTAACTGGCCCCTGACAGGGAAGAGTGGCTGCCAGAGGGCCCCACTC CGTCAGCTGGGCCTTTGTCTGGCTGTGTAGGGCTGTGTTGACTACCATGGGGAGACAGAG GGAGGTAAGCCCAACCCCTGGGAGACCTTGCTGCTGCCCATCCTAGGCTGGGCCAGTCCC ACCCCCACCCCACCCAGGGTGCCCTGCAGCCCGAGGCAGCTGCTGCCTCCCCTTGCTCAT CATTCTGCTCTCAATGCCTCTGGATCATGGATGGAGGCCTGGGGCCAGGGTTGAGTTCTG TCTGGTTTTGTTGCAGTTTGGGTTTAGAAGGCTGGAGAAGCACTCCAGCAGTTATTACTG AGACTTTGGGGTCAGAAGGGGGCAGGATGCCCTCAACTTCACCTGGGGACCAGGACCACA CTGGGCATTTGAGGTGGGCAGGAGTAGTGCTGCTTCTGCTGGTGGCAAAGTTGTTGCTCC AACTCCAAGCCCACTTCCAGTGGGTCTCGGGAGAGTTTCAGGAGCCTGTTGGCCCCAGGC CCTGTCACTTGCTTTCCATCCATCCTTGGGCAGTGCCATCTTCAGTTTTATTTATTGAAG TGTTTGTTCAGTACAGGGCCTGGGGAGAGGGGGCTCATTGCCTCCCACCCACCAGGCACC CTGTTCACACTAATGTTTACAGCACCTAAGCTTAGCACAGTGTCCAGGGCCCCGCCACTC CCTGCTCACGGTGAACTGACAGTATCCATAGGCCTCAGGACCACATGGGGTCAGAGACTA CACTCAAAGTCACTCCAGCCTCTTTCTTTCTCCCTCTTCCACTTGCTCACTGCCCTGGAA TCAACAGACTGGTTGCTGGTTGGATTTTCTGAAGCAAGAGCTAGAATCACCCTTTAGCAG AGGCTCCGACCCAAGGAAAGGTGTTGGGGATCCAGCCTCCTTAGGAATGGAGAAAGAGCT GCAATTAACCAAGTGGCCTTTTCCCACTCTAGCTGACCCGGTGGGGGGGGGACTAGGTTG CAGAGGTGAGCAGGCTCCCCCCCAAGGCCGATTTATGCCATTCTTGTCTTTGGACTTGCT TGCTTAGGGAGGGAGGGGTCAGACCAGAGGGCCAGGAGCTGATGGGATCAGGCTCACCTC CTCTGGTCCAGTAGGACCAGGTGCCTTCACTGGACTAGGCTGGCCTGGCAGTGGTCCCAA GGCCCTTCAGCTCGGCTGGTACAAAGCTGAGGCCAGCAGATCTTCCCCGGCACCCTCACC TGTGACACTAAGACCTGCCCTGATCCCAGATTCCAGGCAGTATTCTCCCCCATGCCGTCC AACGACCAAAGGCCCTGCCAGGTGTGGGCCGCAGCAGCAGGTGTGTGTGAAAGCGATGTG GCGACCCGCGGACTGCAGTGTGCTTAACCAGCTCACCTCCCTCCTCTTAGCCCAAGCCTG TCCCTCGCACAGCCTCGCACAAACCACGTTGCCTGGTGGGGCCCAGTGTACTTAAATAAA GTTGTTCCAATAGACAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 518-1216, + strand, RNAz p=0.974792 | |
| 2009-2123, - strand, RNAz p=0.571874 | |
| 2517-2675, + strand, RNAz p=0.931111 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 518-1216, + strand, RNAz p=0.974792 | |
| 2009-2123, - strand, RNAz p=0.571874 | |
| 2517-2675, + strand, RNAz p=0.931111 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 125-1216, gnl|bosTau2|chr3 (54413030-54414129) | |
| 125-1216, gnl|Hg17|chr5 (56814270-56813171) | |
| 125-1216, gnl|Mm7|chr13 (108405424-108406523) | |
| 132-662, gnl|bosTau2|chr1 (93219640-93219115) | |
| 132-662, gnl|Hg17|chr7 (5342505-5341403) | |
| 132-662, gnl|Mm7|chr5 (141938567-141937499) | |
| 285-573, gnl|bosTau2|chr10 (19086757-19086473) | |
| 285-573, gnl|canFam2|chr30 (5506751-5507104) | |
| 285-573, gnl|dasNov1|scaffold_19757 (44022-43669) | |
| 285-573, gnl|echTel1|scaffold_318944 (3386-3034) | |
| 285-573, gnl|fr1|chrUn (63305598-63305946) | |
| 285-573, gnl|galGal2|chr5 (29145784-29145442) | |
| 285-573, gnl|hg17|chr15 (32872717-32873069) | |
| 285-573, gnl|Hg17|chr15 (32873009-32872725) | |
| 285-573, gnl|loxAfr1|scaffold_10024 (29037-28725) | |
| 285-573, gnl|mm7|chr2 (113791108-113791460) | |
| 285-573, gnl|Mm7|chr2 (113791400-113791116) | |
| 285-573, gnl|monDom2|scaffold_12 (9572456-9572112) | |
| 285-573, gnl|oryCun1|scaffold_179293 (445-93) | |
| 285-573, gnl|panTro1|chr16 (32653340-32653692) | |
| 285-573, gnl|rheMac2|chr7 (13132136-13132488) | |
| 285-573, gnl|rn3|chr3 (99800397-99800748) | |
| 285-573, gnl|tetNig1|chr10 (7897220-7896871) | |
| 285-573, gnl|xenTro1|scaffold_199 (677786-677445) | |
| 814-1169, gnl|bosTau2|chr16 (36111850-36111495) | |
| 814-1169, gnl|Hg17|chr1 (2962129-2962484) | |
| 814-1169, gnl|Mm7|chr4 (153656498-153656143) | |
| 844-1022, gnl|bosTau2|chr11 (3297613-3297791) | |
| 844-1022, gnl|Hg17|chr2 (97733100-97732922) | |
| 844-1022, gnl|Mm7|chr1 (36942691-36942513) | |
| 1653-2956, gnl|bosTau2|chr26 (14060218-14061508) | |
| 1653-2956, gnl|Hg17|chr10 (104230207-104228981) | |
| 1653-2956, gnl|Mm7|chr19 (46274619-46273447) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 125-1216, gnl|bosTau2|chr3 (54413030-54414129) | |
| 125-1216, gnl|Hg17|chr5 (56814270-56813171) | |
| 125-1216, gnl|Mm7|chr13 (108405424-108406523) | |
| 132-662, gnl|bosTau2|chr1 (93219640-93219115) | |
| 132-662, gnl|Hg17|chr7 (5342505-5341403) | |
| 132-662, gnl|Mm7|chr5 (141938567-141937499) | |
| 285-573, gnl|bosTau2|chr10 (19086757-19086473) | |
| 285-573, gnl|canFam2|chr30 (5506751-5507104) | |
| 285-573, gnl|dasNov1|scaffold_19757 (44022-43669) | |
| 285-573, gnl|echTel1|scaffold_318944 (3386-3034) | |
| 285-573, gnl|fr1|chrUn (63305598-63305946) | |
| 285-573, gnl|galGal2|chr5 (29145784-29145442) | |
| 285-573, gnl|hg17|chr15 (32872717-32873069) | |
| 285-573, gnl|Hg17|chr15 (32873009-32872725) | |
| 285-573, gnl|loxAfr1|scaffold_10024 (29037-28725) | |
| 285-573, gnl|mm7|chr2 (113791108-113791460) | |
| 285-573, gnl|Mm7|chr2 (113791400-113791116) | |
| 285-573, gnl|monDom2|scaffold_12 (9572456-9572112) | |
| 285-573, gnl|oryCun1|scaffold_179293 (445-93) | |
| 285-573, gnl|panTro1|chr16 (32653340-32653692) | |
| 285-573, gnl|rheMac2|chr7 (13132136-13132488) | |
| 285-573, gnl|rn3|chr3 (99800397-99800748) | |
| 285-573, gnl|tetNig1|chr10 (7897220-7896871) | |
| 285-573, gnl|xenTro1|scaffold_199 (677786-677445) | |
| 814-1169, gnl|bosTau2|chr16 (36111850-36111495) | |
| 814-1169, gnl|Hg17|chr1 (2962129-2962484) | |
| 814-1169, gnl|Mm7|chr4 (153656498-153656143) | |
| 844-1022, gnl|bosTau2|chr11 (3297613-3297791) | |
| 844-1022, gnl|Hg17|chr2 (97733100-97732922) | |
| 844-1022, gnl|Mm7|chr1 (36942691-36942513) | |
| 1653-2956, gnl|bosTau2|chr26 (14060218-14061508) | |
| 1653-2956, gnl|Hg17|chr10 (104230207-104228981) | |
| 1653-2956, gnl|Mm7|chr19 (46274619-46273447) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| ece (0.45861) | |
| cov (0.396458) | |
| cag (0.302389) | |
| ssp (0.271039) | |
| eep (0.245128) | |
| cly (0.241284) | |
| clu (0.239292) | |
| ebs (0.236602) | |
| tes (0.207814) | |
| jej (0.197844) | |
| nje (0.16592) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| bla (0.124347) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.45861) | |
| cov (0.396458) | |
| cag (0.302389) | |
| ssp (0.271039) | |
| eep (0.245128) | |
| cly (0.241284) | |
| clu (0.239292) | |
| ebs (0.236602) | |
| tes (0.207814) | |
| jej (0.197844) | |
| nje (0.16592) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| bla (0.124347) | |
| jca (0.11396) | |
| eje (0.0988338) |