Non-Coding RNA Search

Ss1.1-Pig4-TMW8035D15.3

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTGAAGAGCGCCTTTATTGGG
GTGACGAAGGCTCCCAAAGTGAAGGGGTTCACTGGAGTGAAGGGATCAGTGGCTTTCAGT
TTCAAGGTCTGGTTTTCAGTCCTCTGGTACCTGGGCGTGAATCGCTGCAGCAAGGCTGGG
CCAGGTTAGGGCCCCACGCACTTTGGAATCCGGACCAGGGATAGTCTCCAGGCCCCACAG
GGTGAAGCTGCTGAAACTGGCTGTGGCGCCGATAAAGCGGTCGAAGTCCCGCTCCAGCGT
CTCCGGGGATTCCATCACTTCGTGGTCCTCCTCCGACCCCTCCGAGAAGTCCTGCTTCCC
CACCGACACCTCTCCCTGCTCTTCTGTCATCACGTATCCCACAAGGCCGGGCGGCACCGC
CACCTCCTCGCCGCGCAGACTGCGGCCCCGGAAGGACGCTTCCAGCCCGTAGGGACCCTG
GCGGATGGCTGGGGTGAAGAAGCGCCCCACCGGGGCGGGCCGGCTAACCGGGACCTCGCA
GGGCAGAAGGTGCAGCGTGACGGGGGCGGGACTGCGCAGCGTAAAAGGGCGCAGGTGCAC
GCGGCGCCTGTGCACCGACTCCTCGTCGCTGCTCTCCATGGCTCGGCCGCACCCCGCCGC
TCGCTGGCTAAGGCCGAAGCTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTGAAGAGCGCCTTTATTGGG
GTGACGAAGGCTCCCAAAGTGAAGGGGTTCACTGGAGTGAAGGGATCAGTGGCTTTCAGT
TTCAAGGTCTGGTTTTCAGTCCTCTGGTACCTGGGCGTGAATCGCTGCAGCAAGGCTGGG
CCAGGTTAGGGCCCCACGCACTTTGGAATCCGGACCAGGGATAGTCTCCAGGCCCCACAG
GGTGAAGCTGCTGAAACTGGCTGTGGCGCCGATAAAGCGGTCGAAGTCCCGCTCCAGCGT
CTCCGGGGATTCCATCACTTCGTGGTCCTCCTCCGACCCCTCCGAGAAGTCCTGCTTCCC
CACCGACACCTCTCCCTGCTCTTCTGTCATCACGTATCCCACAAGGCCGGGCGGCACCGC
CACCTCCTCGCCGCGCAGACTGCGGCCCCGGAAGGACGCTTCCAGCCCGTAGGGACCCTG
GCGGATGGCTGGGGTGAAGAAGCGCCCCACCGGGGCGGGCCGGCTAACCGGGACCTCGCA
GGGCAGAAGGTGCAGCGTGACGGGGGCGGGACTGCGCAGCGTAAAAGGGCGCAGGTGCAC
GCGGCGCCTGTGCACCGACTCCTCGTCGCTGCTCTCCATGGCTCGGCCGCACCCCGCCGC
TCGCTGGCTAAGGCCGAAGCTGGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|28628365|gb|AAO49177.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28628365|gb|AAO49177.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               33-519, gnl|bosTau2|chr14 (7575825-7575321)
               

               
               33-519, gnl|Hg17|chr11 (65243733-65244645)
               

               
               33-519, gnl|Mm7|chr19 (5497741-5496875)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-519, gnl|bosTau2|chr14 (7575825-7575321)
               

               
               33-519, gnl|Hg17|chr11 (65243733-65244645)
               

               
               33-519, gnl|Mm7|chr19 (5497741-5496875)

Expressed library(ies): 30 entry(ies)

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Expressed library(ies): 30 entry(ies)

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               hlv (0.835538)
               

               
               che (0.545256)
               

               
               cov (0.528611)
               

               
               ill (0.351185)
               

               
               mcp (0.341297)
               

               
               csp (0.322373)
               

               
               pty (0.285429)
               

               
               nca (0.273748)
               

               
               ese (0.253004)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.835538)
               

               
               che (0.545256)
               

               
               cov (0.528611)
               

               
               ill (0.351185)
               

               
               mcp (0.341297)
               

               
               csp (0.322373)
               

               
               pty (0.285429)
               

               
               nca (0.273748)
               

               
               ese (0.253004)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	33-519, gnl\|bosTau2\|chr14 (7575825-7575321)
	33-519, gnl\|Hg17\|chr11 (65243733-65244645)
	33-519, gnl\|Mm7\|chr19 (5497741-5496875)

	hlv (0.835538)
	che (0.545256)
	cov (0.528611)
	ill (0.351185)
	mcp (0.341297)
	csp (0.322373)
	pty (0.285429)
	nca (0.273748)
	ese (0.253004)
	med (0.232504)
	ecc (0.23007)
	ece (0.229305)
	nms (0.213858)
	hea (0.204499)
	nbm (0.198649)
	col (0.195008)
	nlu (0.191681)
	nep (0.183925)
	ton (0.1755)
	fhi (0.169578)
	nje (0.16592)
	cje (0.165235)
	nco (0.161734)
	cag (0.151194)
	hyp (0.142837)
	thg (0.126791)
	pgl (0.118483)
	jej (0.0989218)
	eje (0.0988338)
	ldo (0.0970026)