Non-Coding RNA Search

Ss1.1-Pig4-TMW8035D20.5

Sequence:


               
               GAGAACTTTATAAGCTTCTTTTTCTTCAATAAAGTCTGGCATCTTGCTGTCATTAAAGGC
AGTTGTTCCTAGAGTTTCAATCTCTTAAGTACACCCACAAAACAAAAATACGGAATTCTT
AATTTCCCTTCAACTTTAATTTGCCTGGTTATACCTCAATGTTGTAGCAGCACCGTGGTA
CTGACACATGGTGCTTTGATTTTATCGTAGCTTCTGTACTGACCTGAAGGAGACCTGAGT
CCTTTCTGAGTTTGAATCACAGCCCTGATGTGGTCTTTCTTGTTTTATGTCCTTGTTCCT
AATGTAAAAGTACTTAACTGCTTCTTGGTTGTATTGGGTGGCACTGGGATAAGATTTTAA
CTGGGGATTCTTGAATTGCTTTTACAATAAACCAATTTTATAATCTTTAAATTTATCAGC
TTATCACATTTGTGTTCTTTTTAGTTAGGGCTTCTTAGATCTCCTTACGGTTGATGGAGC
ACATTGATTTGATGTTTCAGATTTTCTAGAGCACTGTTTGTTGTAATAACTTTTTTCTAA
ATATAGTGCCTTTTTTAGAAAAGAAAAAAAGGAACATAAGGAAGTGACTTTTATACAAAT
AATGTTGTTGTTTGAAGTATTCATACTAAATAAAATTCTGTATGGAACTTTGGCAGAAAC
ACTTTAAAAAAAAAAAACTAATTGTGTAATTGATAATTCATACCAGTCAGTGTTGAAACT
CAGTGCAGAAGTGGGAGGCAATATTCAGTGATTACCAATTTCACAGCTACACATCTGAGA
AATGAGCACTCAGATGAATTTTATCTTCCCATGAGCACGTTTTTGTAAGAATTGTGGGTG
TGCCTATCTTGACAGTTGTTTTCTGTATCTGGAAAGAGTATTCTCCACATTTTAAATGTT
TTATATTAGAGAATTCCTTAATGCACACTTGTCAAATATATATATATAGTACCAATGTTA
CCTTTTTATTTTTTTGTTTTAGATGTAAGAGCATGCTCATATGTTAGGTACTTACATAAA
TTGTTACATTATTTTTTCTTATGTAATACCTTTTTGTTTGTTTATATGGTTCAAATATAT
TCTTTCTTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAACTTTATAAGCTTCTTTTTCTTCAATAAAGTCTGGCATCTTGCTGTCATTAAAGGC
AGTTGTTCCTAGAGTTTCAATCTCTTAAGTACACCCACAAAACAAAAATACGGAATTCTT
AATTTCCCTTCAACTTTAATTTGCCTGGTTATACCTCAATGTTGTAGCAGCACCGTGGTA
CTGACACATGGTGCTTTGATTTTATCGTAGCTTCTGTACTGACCTGAAGGAGACCTGAGT
CCTTTCTGAGTTTGAATCACAGCCCTGATGTGGTCTTTCTTGTTTTATGTCCTTGTTCCT
AATGTAAAAGTACTTAACTGCTTCTTGGTTGTATTGGGTGGCACTGGGATAAGATTTTAA
CTGGGGATTCTTGAATTGCTTTTACAATAAACCAATTTTATAATCTTTAAATTTATCAGC
TTATCACATTTGTGTTCTTTTTAGTTAGGGCTTCTTAGATCTCCTTACGGTTGATGGAGC
ACATTGATTTGATGTTTCAGATTTTCTAGAGCACTGTTTGTTGTAATAACTTTTTTCTAA
ATATAGTGCCTTTTTTAGAAAAGAAAAAAAGGAACATAAGGAAGTGACTTTTATACAAAT
AATGTTGTTGTTTGAAGTATTCATACTAAATAAAATTCTGTATGGAACTTTGGCAGAAAC
ACTTTAAAAAAAAAAAACTAATTGTGTAATTGATAATTCATACCAGTCAGTGTTGAAACT
CAGTGCAGAAGTGGGAGGCAATATTCAGTGATTACCAATTTCACAGCTACACATCTGAGA
AATGAGCACTCAGATGAATTTTATCTTCCCATGAGCACGTTTTTGTAAGAATTGTGGGTG
TGCCTATCTTGACAGTTGTTTTCTGTATCTGGAAAGAGTATTCTCCACATTTTAAATGTT
TTATATTAGAGAATTCCTTAATGCACACTTGTCAAATATATATATATAGTACCAATGTTA
CCTTTTTATTTTTTTGTTTTAGATGTAAGAGCATGCTCATATGTTAGGTACTTACATAAA
TTGTTACATTATTTTTTCTTATGTAATACCTTTTTGTTTGTTTATATGGTTCAAATATAT
TCTTTCTTTAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-1092, gnl|bosTau2|chr2 (83915686-83914587)
               

               
               1-1092, gnl|Hg17|chr11 (101608257-101609359)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1092, gnl|bosTau2|chr2 (83915686-83914587)
               

               
               1-1092, gnl|Hg17|chr11 (101608257-101609359)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               gul (0.710353)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.710353)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

	1-1092, gnl\|bosTau2\|chr2 (83915686-83914587)
	1-1092, gnl\|Hg17\|chr11 (101608257-101609359)

	gul (0.710353)
	hea (0.204499)
	fli (0.202881)
	aor (0.195274)
	fhi (0.169578)
	mga (0.160205)
	bfe (0.149858)
	ski (0.146735)
	lyg (0.133103)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	tra (0.123092)