Non-Coding RNA Search

Ss1.1-Pig4-TMW8035E04.5

Sequence:


               
               CCAGGGGCAAGACATAACCGGCCCGGATTCCGCGGCCGTCCGCGTGAATAGGTGGTTGTC
CCACAGGCAAAGGCATGAGCTGGGCCCAAGCCGTTCTGCTGGCCCGGAGCCTTTCTCGGG
GCTGGGGAGGCATCTGCAGCACCGCCCTCACAGGAGCCCCCTTCTCTCAGGTGCCACTCC
AGGCAGCACACGGCCTTCACTGCAGCACAGCCATGCACACCTTTGACTCATCGCTGGTCC
CGCACCCACCCAAGCCCCCGAGGAGGCCCATCAAGGCCCTGGCACTCCACGAGGAGCTGT
TTAGGAAGGCACCGGATGGGACACGGGAGAAGGCGAGCTTTGTGCAGGCCATACAGGACT
TTGCGCAGTACAACGTGCACAAGCGGGGCCATGTCGACTTCATCTACCTGGCCCTGCGCA
AGATGCGGGAGTATGGCGTCGAGCGGGACCTGGCTGTCTATAACCTGCTGCTTGACATCT
TCCCCAAGGAGGTCTTCCGGCCTCGCAGCATCTTCCAGACCATCTTCTACCACTACCCAC
GGCAGCAGGAGTGCGGGATCGCTGTCCTGGAGCAGATGGAGAACCACGGGGTGATGCCCA
ACAAGGAAACAGAGTTCCTGCTGATTCAGATATTTGGACGCAAAAGCTACCCCATGCTCA
AGTATGTGCGCATGAAGCTGTGGTTCACCCGCTTCAGAAACATCAACCCCTTCCCTCTGC
CCCGGGACCTTCCTCAGGACCCCGTGGACCTGGCCAGGTTGGCCTTGCGGCACATGGAGC
CCGACCTCAGCGCTAGGGTCACCGTCTACCAGATGTCTTTGCCTGAAGACTCCAAAGATG
CAGTGGATCCCACAGAGCCACACATTGTAGGAATCCAGAGTCCTGATCAGCAGGCCGCCC
TGGCCTGCCACGACCCAGCCCGGCCTATCTTCGTCGAGGGCCCCTTCTCCTTGTGGCTTC
GAGACAAATGTGTCTATTACCACATCCTCAGAGCTGACCTGCTGCCCCCTGAGGAGAGGA
AAGTGGAGGAGATTCCAGAGGAGTGGAGCCTCTACTACCCGATGCAGCTAGACCTGGCCT
ACGAGAGGAGCGGCTGGGATGACTACAAGTTTAACATCAATGAAGTGGAGGAAGGCCCTG
TCTTCGCCATATGCATGGCGGGTGCCCATGACCAGGCCACACTGGCCAAGTGGATCCAGG
GTCTGCAGGAGACCAACCCAGCCCTGGCCCGGATCCCGGTGGTCTTCCGCCTGGCAGGGT
CCGCTGGGGAGCTTCTGGCGTCCTCCTCAGGGCCGGAAGGGTCCTCCCCACCCCCATCGG
AGGGCCAGGAAGAGGAGGACGACAATCAGCAGAGACAGCAGCAGGGCCAGAGCTGAGCCT
GAGCGGTCATAGGTGCACAAGCTGTGGACCGGTGTGAAGGGGTGAGGTAACCTTTGAGTG
TTCAGCAAATAAATAAAAGTTTTCCGGCTTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGGGGCAAGACATAACCGGCCCGGATTCCGCGGCCGTCCGCGTGAATAGGTGGTTGTC
CCACAGGCAAAGGCATGAGCTGGGCCCAAGCCGTTCTGCTGGCCCGGAGCCTTTCTCGGG
GCTGGGGAGGCATCTGCAGCACCGCCCTCACAGGAGCCCCCTTCTCTCAGGTGCCACTCC
AGGCAGCACACGGCCTTCACTGCAGCACAGCCATGCACACCTTTGACTCATCGCTGGTCC
CGCACCCACCCAAGCCCCCGAGGAGGCCCATCAAGGCCCTGGCACTCCACGAGGAGCTGT
TTAGGAAGGCACCGGATGGGACACGGGAGAAGGCGAGCTTTGTGCAGGCCATACAGGACT
TTGCGCAGTACAACGTGCACAAGCGGGGCCATGTCGACTTCATCTACCTGGCCCTGCGCA
AGATGCGGGAGTATGGCGTCGAGCGGGACCTGGCTGTCTATAACCTGCTGCTTGACATCT
TCCCCAAGGAGGTCTTCCGGCCTCGCAGCATCTTCCAGACCATCTTCTACCACTACCCAC
GGCAGCAGGAGTGCGGGATCGCTGTCCTGGAGCAGATGGAGAACCACGGGGTGATGCCCA
ACAAGGAAACAGAGTTCCTGCTGATTCAGATATTTGGACGCAAAAGCTACCCCATGCTCA
AGTATGTGCGCATGAAGCTGTGGTTCACCCGCTTCAGAAACATCAACCCCTTCCCTCTGC
CCCGGGACCTTCCTCAGGACCCCGTGGACCTGGCCAGGTTGGCCTTGCGGCACATGGAGC
CCGACCTCAGCGCTAGGGTCACCGTCTACCAGATGTCTTTGCCTGAAGACTCCAAAGATG
CAGTGGATCCCACAGAGCCACACATTGTAGGAATCCAGAGTCCTGATCAGCAGGCCGCCC
TGGCCTGCCACGACCCAGCCCGGCCTATCTTCGTCGAGGGCCCCTTCTCCTTGTGGCTTC
GAGACAAATGTGTCTATTACCACATCCTCAGAGCTGACCTGCTGCCCCCTGAGGAGAGGA
AAGTGGAGGAGATTCCAGAGGAGTGGAGCCTCTACTACCCGATGCAGCTAGACCTGGCCT
ACGAGAGGAGCGGCTGGGATGACTACAAGTTTAACATCAATGAAGTGGAGGAAGGCCCTG
TCTTCGCCATATGCATGGCGGGTGCCCATGACCAGGCCACACTGGCCAAGTGGATCCAGG
GTCTGCAGGAGACCAACCCAGCCCTGGCCCGGATCCCGGTGGTCTTCCGCCTGGCAGGGT
CCGCTGGGGAGCTTCTGGCGTCCTCCTCAGGGCCGGAAGGGTCCTCCCCACCCCCATCGG
AGGGCCAGGAAGAGGAGGACGACAATCAGCAGAGACAGCAGCAGGGCCAGAGCTGAGCCT
GAGCGGTCATAGGTGCACAAGCTGTGGACCGGTGTGAAGGGGTGAGGTAACCTTTGAGTG
TTCAGCAAATAAATAAAAGTTTTCCGGCTTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7407498|gb|AAF62100.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7407498|gb|AAF62100.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1204-1317, - strand, RNAz p=0.559426

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1204-1317, - strand, RNAz p=0.559426

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               168-599, gnl|bosTau2|chr7 (11358687-11358258)
               

               
               168-599, gnl|Hg17|chr19 (11486039-11485610)
               


               
               869-1019, gnl|bosTau2|chr7 (11357120-11356970)
               

               
               869-1019, gnl|Hg17|chr19 (11479667-11479517)
               

               
               869-1019, gnl|Mm7|chr9 (21953407-21953257)
               


               
               1124-1473, gnl|bosTau2|chr7 (11356138-11355793)
               

               
               1124-1473, gnl|Hg17|chr19 (11478245-11477896)
               

               
               1124-1473, gnl|Mm7|chr9 (21952413-21952086)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-599, gnl|bosTau2|chr7 (11358687-11358258)
               

               
               168-599, gnl|Hg17|chr19 (11486039-11485610)
               


               
               869-1019, gnl|bosTau2|chr7 (11357120-11356970)
               

               
               869-1019, gnl|Hg17|chr19 (11479667-11479517)
               

               
               869-1019, gnl|Mm7|chr9 (21953407-21953257)
               


               
               1124-1473, gnl|bosTau2|chr7 (11356138-11355793)
               

               
               1124-1473, gnl|Hg17|chr19 (11478245-11477896)
               

               
               1124-1473, gnl|Mm7|chr9 (21952413-21952086)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               mas (0.42061)
               

               
               mcp (0.341297)
               

               
               nco (0.323468)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)
               

               
               mcp (0.341297)
               

               
               nco (0.323468)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

	168-599, gnl\|bosTau2\|chr7 (11358687-11358258)
	168-599, gnl\|Hg17\|chr19 (11486039-11485610)

	869-1019, gnl\|bosTau2\|chr7 (11357120-11356970)
	869-1019, gnl\|Hg17\|chr19 (11479667-11479517)
	869-1019, gnl\|Mm7\|chr9 (21953407-21953257)

	1124-1473, gnl\|bosTau2\|chr7 (11356138-11355793)
	1124-1473, gnl\|Hg17\|chr19 (11478245-11477896)
	1124-1473, gnl\|Mm7\|chr9 (21952413-21952086)

	mas (0.42061)
	mcp (0.341297)
	nco (0.323468)
	cte (0.29274)
	fce (0.271592)
	ssp (0.271039)
	cbe (0.239234)
	hea (0.204499)
	eje (0.197668)
	col (0.195008)
	cmu (0.186393)
	fty (0.17584)
	nje (0.16592)
	pty (0.142714)
	cov (0.132153)
	ese (0.126502)
	ebs (0.118301)
	jej (0.0989218)