Non-Coding RNA Search

Ss1.1-Pig4-TMW8035E12.3

Sequence:


               
               TAAGTATGTCTGTCCTCCCTTACTTTCCCCTCCCTCCCTCCATCCTCTAGCCCCCAGAGG
TCTCTTACTAATAGAATTTCTCCAGTTATAGAGATAAATGATAATAAAAACTAAACCTCG
TTTATACTAAGGTCCTATGGACTTTAGGTGTTACTCTTAGGGATACCTGAATATTAAGAG
AGGATAACAGAGCAGACATAGAATGGGGAGGAAGAGATTTGGGGATAGAGAATTTGTAGA
AGCATCAAATTTTATGACTACTCTCTAGCCCCAATATTCCCGGGAAAATTGACCATTAAA
GCGGTTCTCACTGGCCTCCTTACTTCATTTTGGTCAGCTGAGTGCCATGAGGTCATTTAG
TCCTTCTTGTGCTGTTTTGGAGCCAGAAAGCTACAGCGAGAGTACCTCTGCCTGACAGCC
TCAGTTTGGACTGGCCTGTGAAATTATTTACCTGGTCCTATATTTTTTTGTAGGACACAT
GGTGGACATAACACCATTTATAATGAACATTCCCTGGTACTTATATTTTGAGGAATGTGA
GAAGGAGTTGAATTTATACATCTCAAGGAAAGCTATATCTGACAAAAACTTCAGAGAAGT
AAAAAGCAAGCAGTGTAACCTGTTAGAGCAAGGAAAGCATTTCTGGCCTCATCCGTGAAG
AGCCTTAGGTCTGTTATGATCATCTTGATAGGAGTTTAGGAGCTCACATGAGTTTGCTCT
GTGCAGGGGAGTAACGGAAGGTTAATGCAAGTTTTCTCTTCAACCTTGAGCGAGTGACAA
TGCCAAGGGAAGAAGCAGGAAGAACACACTGATTCATTTGGAGAAATCAAATGATGTCAC
GTGGACTCAAAAGGTTATGAATCATCAAAACGTCGTGGCTGAATGATGCTTTTTCAAAGG
CAGCTGGGAACCTTTCCTACTTGTTACTCATGCGTACGCAATAGCTGCGCCAGCGGCCCT
TAGAACGGGAGCCCAGGGCTTCAGGTCTGCGTTAGTTCAAGGCTAAGTGATTCAAAGTGA
AGTTTTCATGCTAGGCACAAGCACTCTATAATACATTAAATTTCAGCCCAAGCAATTGGG
GAGTGTTTCTGAAACATTAAGCTTGTATTTATGTCACTAAAATTCTAACACAAATTTTAA
AAACATGTCTCATACATATGCTGTACTAGGCCTCATGATGCATTTCTAAATTTGTGTATG
ATTTGAATATATGAAAGAATTTATACAAGAGTGTTATTTAAAATTATTAAAAAATAAATG
TATATAATTTGTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGTATGTCTGTCCTCCCTTACTTTCCCCTCCCTCCCTCCATCCTCTAGCCCCCAGAGG
TCTCTTACTAATAGAATTTCTCCAGTTATAGAGATAAATGATAATAAAAACTAAACCTCG
TTTATACTAAGGTCCTATGGACTTTAGGTGTTACTCTTAGGGATACCTGAATATTAAGAG
AGGATAACAGAGCAGACATAGAATGGGGAGGAAGAGATTTGGGGATAGAGAATTTGTAGA
AGCATCAAATTTTATGACTACTCTCTAGCCCCAATATTCCCGGGAAAATTGACCATTAAA
GCGGTTCTCACTGGCCTCCTTACTTCATTTTGGTCAGCTGAGTGCCATGAGGTCATTTAG
TCCTTCTTGTGCTGTTTTGGAGCCAGAAAGCTACAGCGAGAGTACCTCTGCCTGACAGCC
TCAGTTTGGACTGGCCTGTGAAATTATTTACCTGGTCCTATATTTTTTTGTAGGACACAT
GGTGGACATAACACCATTTATAATGAACATTCCCTGGTACTTATATTTTGAGGAATGTGA
GAAGGAGTTGAATTTATACATCTCAAGGAAAGCTATATCTGACAAAAACTTCAGAGAAGT
AAAAAGCAAGCAGTGTAACCTGTTAGAGCAAGGAAAGCATTTCTGGCCTCATCCGTGAAG
AGCCTTAGGTCTGTTATGATCATCTTGATAGGAGTTTAGGAGCTCACATGAGTTTGCTCT
GTGCAGGGGAGTAACGGAAGGTTAATGCAAGTTTTCTCTTCAACCTTGAGCGAGTGACAA
TGCCAAGGGAAGAAGCAGGAAGAACACACTGATTCATTTGGAGAAATCAAATGATGTCAC
GTGGACTCAAAAGGTTATGAATCATCAAAACGTCGTGGCTGAATGATGCTTTTTCAAAGG
CAGCTGGGAACCTTTCCTACTTGTTACTCATGCGTACGCAATAGCTGCGCCAGCGGCCCT
TAGAACGGGAGCCCAGGGCTTCAGGTCTGCGTTAGTTCAAGGCTAAGTGATTCAAAGTGA
AGTTTTCATGCTAGGCACAAGCACTCTATAATACATTAAATTTCAGCCCAAGCAATTGGG
GAGTGTTTCTGAAACATTAAGCTTGTATTTATGTCACTAAAATTCTAACACAAATTTTAA
AAACATGTCTCATACATATGCTGTACTAGGCCTCATGATGCATTTCTAAATTTGTGTATG
ATTTGAATATATGAAAGAATTTATACAAGAGTGTTATTTAAAATTATTAAAAAATAAATG
TATATAATTTGTAAAAAAAAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               2-912, gnl|bosTau2|chr8 (61661547-61662452)
               

               
               2-912, gnl|Mm7|chr4 (69863827-69862894)
               


               
               938-1273, gnl|bosTau2|chr8 (61662457-61662787)
               

               
               938-1273, gnl|Hg17|chr9 (120443093-120442759)
               

               
               938-1273, gnl|Mm7|chr4 (69862889-69862550)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-912, gnl|bosTau2|chr8 (61661547-61662452)
               

               
               2-912, gnl|Mm7|chr4 (69863827-69862894)
               


               
               938-1273, gnl|bosTau2|chr8 (61662457-61662787)
               

               
               938-1273, gnl|Hg17|chr9 (120443093-120442759)
               

               
               938-1273, gnl|Mm7|chr4 (69862889-69862550)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               fbs (0.350693)
               

               
               sin (0.349895)
               

               
               ski (0.29347)
               

               
               cbe (0.239234)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               sin (0.349895)
               

               
               ski (0.29347)
               

               
               cbe (0.239234)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	2-912, gnl\|bosTau2\|chr8 (61661547-61662452)
	2-912, gnl\|Mm7\|chr4 (69863827-69862894)

	938-1273, gnl\|bosTau2\|chr8 (61662457-61662787)
	938-1273, gnl\|Hg17\|chr9 (120443093-120442759)
	938-1273, gnl\|Mm7\|chr4 (69862889-69862550)

	fbs (0.350693)
	sin (0.349895)
	ski (0.29347)
	cbe (0.239234)
	sto (0.179824)
	cut (0.169924)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	ese (0.126502)
	ecc (0.115035)
	jca (0.11396)