Non-Coding RNA Search

Ss1.1-Pig4-TMW8035E22.3.5

Sequence:


               
               TTCGGCCCTCTGCGCCGCCATGGATCTCACCGCCATCTACGAGAGCCTCCTGTCGCTGAG
CCCTGACCTGCCATCCTCCGACCACGGAGAGACTGAGTCCAGCCCGGGCTGGGCCACCGC
GGGACTGTGGAGCCTCAACTCATCCGATTCCAGCCCGGCTGGGGTCGCTGCCCGCCTACC
TGGTCGCTCCACCAGCTTGGTGGAAGGTCGCAGCTGCGGCTGGGTGCCCCCACCCCCAGG
CTTTGCACCCTTGGCTCCCCGCCCAGGCCCTGAACTGTCGCCCTCACCCACCTCGCCAAC
TTCGACCCCCACCACCTCCTCCCGCTACAAGACTGAGTTATGTCGGACTTTCTCAGAGAG
CGGGCGCTGCCGCTATGGGGCCAAGTGCCAGTTTGCCCATGGCCTGGGCGAGCTGCGCCA
GGCCAGTCGCCACCCCAAGTACAAGACGGAACTCTGCCACAAGTTCTACCTCCAGGGCCG
CTGCCCCTACGGCTCTCGCTGCCACTTCATCCACAACCCCAGCGAAGACCTGGCTGCCCC
CGGTCACCCGCATGTGCTGCGCCAGAGTATCAGCTTCTCAGGCCTGCCCTCCGGTCGCCG
AACCTCGCCACCACCACCCGGCCTAGCAGGCCCTTCCCTGTCCTCATGCTCCTTCTCGCC
CTCCAGCTCCCCACCACCACCACCTGGGGACCTTCCACTTTCACCTTCTGCCTTCTCTGC
TGCCCCTGGGACCCCTGTGGCCCGAAGGGACCCCACCCCGGCCTGTTGCCCGTCCTGCCG
AAGGGCCACTCCCAGCAGCATCTGGGGGCCCTTGGGTGGCCTGCCTCGGAGCCCCTCTGC
ACACTCCCTGGGATCTGATCCTGACGAATATGCCAGCAGTGGCAGCAGCCTGGGGGGATC
CGATTCACCTGTCTTCGATGCCGGGGTTTTGGGGCCACCCCAGCCAACTGCAGTTCCCCG
AAGACTCCCCATCTTCAATCGTATTTCTGTTTCTGAGTGACAAGTGCCTGCCCAGTACAG
ATGAGCTGGATCTTAAGGGGGCCATTTCTCTTGTGCTGTGGGCACCACAAGGGGTCCCAG
GGCTGTGGAGAACTGAGGGACTTAATCAAGTAGCTCCCCTCACTTTCCAGAGTGCATTAA
CTCACTCCCCTGACCGCATGCTGGGGCAGGTCCCCAGTGTGTGAGCTCAGGTGGTCATGG
TATTAGGGGGGAGGAGTGTTTGGGGTCTTAAAAAAAGATGTAGCAAATCTGAGGGAGGCA
GTGAACCCTCTTCCTCCCACCTCTCCCCTGCCCAATGCTGTGAATAATAAGCCCCCCTCT
GCCCCCTTCCACTTTTCCCTAGACACGGAGGTGCCAGTGTTTGATGGTTACTGGAGCCTC
CCCTGAGGGGGTATCCTGGTGCTCAAATTTCCCTCCAAAAGCAAGTAGCCAAAGCCAGCG
TCAACCCCCTGCTCTCCCGCCCTCGCCTTTGGGCCCTTTATTTATGACGACTTTATTTAT
TCTAATAGATTTTATAGTATTTATATATATTGGGTCGTCTGCTTCCCTGTATTTTTCTTC
CTCTTTTTTGTAATATTGGAAACAATGGAATAATTATTGTTATAAGTAAGTATACTATAA
TAATATATTAAGTAATAATATATTGTTAAAAGTTTATTTTTGTGTTTTTTGGAATTTTTA
AATAAAAGAAATCTGTAAGTTGGAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCGGCCCTCTGCGCCGCCATGGATCTCACCGCCATCTACGAGAGCCTCCTGTCGCTGAG
CCCTGACCTGCCATCCTCCGACCACGGAGAGACTGAGTCCAGCCCGGGCTGGGCCACCGC
GGGACTGTGGAGCCTCAACTCATCCGATTCCAGCCCGGCTGGGGTCGCTGCCCGCCTACC
TGGTCGCTCCACCAGCTTGGTGGAAGGTCGCAGCTGCGGCTGGGTGCCCCCACCCCCAGG
CTTTGCACCCTTGGCTCCCCGCCCAGGCCCTGAACTGTCGCCCTCACCCACCTCGCCAAC
TTCGACCCCCACCACCTCCTCCCGCTACAAGACTGAGTTATGTCGGACTTTCTCAGAGAG
CGGGCGCTGCCGCTATGGGGCCAAGTGCCAGTTTGCCCATGGCCTGGGCGAGCTGCGCCA
GGCCAGTCGCCACCCCAAGTACAAGACGGAACTCTGCCACAAGTTCTACCTCCAGGGCCG
CTGCCCCTACGGCTCTCGCTGCCACTTCATCCACAACCCCAGCGAAGACCTGGCTGCCCC
CGGTCACCCGCATGTGCTGCGCCAGAGTATCAGCTTCTCAGGCCTGCCCTCCGGTCGCCG
AACCTCGCCACCACCACCCGGCCTAGCAGGCCCTTCCCTGTCCTCATGCTCCTTCTCGCC
CTCCAGCTCCCCACCACCACCACCTGGGGACCTTCCACTTTCACCTTCTGCCTTCTCTGC
TGCCCCTGGGACCCCTGTGGCCCGAAGGGACCCCACCCCGGCCTGTTGCCCGTCCTGCCG
AAGGGCCACTCCCAGCAGCATCTGGGGGCCCTTGGGTGGCCTGCCTCGGAGCCCCTCTGC
ACACTCCCTGGGATCTGATCCTGACGAATATGCCAGCAGTGGCAGCAGCCTGGGGGGATC
CGATTCACCTGTCTTCGATGCCGGGGTTTTGGGGCCACCCCAGCCAACTGCAGTTCCCCG
AAGACTCCCCATCTTCAATCGTATTTCTGTTTCTGAGTGACAAGTGCCTGCCCAGTACAG
ATGAGCTGGATCTTAAGGGGGCCATTTCTCTTGTGCTGTGGGCACCACAAGGGGTCCCAG
GGCTGTGGAGAACTGAGGGACTTAATCAAGTAGCTCCCCTCACTTTCCAGAGTGCATTAA
CTCACTCCCCTGACCGCATGCTGGGGCAGGTCCCCAGTGTGTGAGCTCAGGTGGTCATGG
TATTAGGGGGGAGGAGTGTTTGGGGTCTTAAAAAAAGATGTAGCAAATCTGAGGGAGGCA
GTGAACCCTCTTCCTCCCACCTCTCCCCTGCCCAATGCTGTGAATAATAAGCCCCCCTCT
GCCCCCTTCCACTTTTCCCTAGACACGGAGGTGCCAGTGTTTGATGGTTACTGGAGCCTC
CCCTGAGGGGGTATCCTGGTGCTCAAATTTCCCTCCAAAAGCAAGTAGCCAAAGCCAGCG
TCAACCCCCTGCTCTCCCGCCCTCGCCTTTGGGCCCTTTATTTATGACGACTTTATTTAT
TCTAATAGATTTTATAGTATTTATATATATTGGGTCGTCTGCTTCCCTGTATTTTTCTTC
CTCTTTTTTGTAATATTGGAAACAATGGAATAATTATTGTTATAAGTAAGTATACTATAA
TAATATATTAAGTAATAATATATTGTTAAAAGTTTATTTTTGTGTTTTTTGGAATTTTTA
AATAAAAGAAATCTGTAAGTTGGAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               TTP_SHEEP

Coded protein: 1 entry(ies)

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Protein identifier


               
               TTP_SHEEP

Predicted RNA structure(s): 5 entry(ies)

More info

Predicted RNA structure(s): 5 entry(ies)

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               198-317, - strand, RNAz p=0.985096
               

               
               558-677, - strand, RNAz p=0.630164
               

               
               718-834, - strand, RNAz p=0.510859
               

               
               1295-1403, - strand, RNAz p=0.919514
               

               
               1444-1561, - strand, RNAz p=0.936146

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-317, - strand, RNAz p=0.985096
               

               
               558-677, - strand, RNAz p=0.630164
               

               
               718-834, - strand, RNAz p=0.510859
               

               
               1295-1403, - strand, RNAz p=0.919514
               

               
               1444-1561, - strand, RNAz p=0.936146

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               42-1696, gnl|bosTau2|chr18 (43752177-43750549)
               

               
               42-1696, gnl|Hg17|chr19 (44590221-44591881)
               

               
               42-1696, gnl|Mm7|chr7 (25312393-25310692)
               


               
               313-520, gnl|bosTau2|chr10 (54880910-54880703)
               

               
               313-520, gnl|Hg17|chr14 (68326690-68326483)
               

               
               313-520, gnl|Mm7|chr12 (78073280-78073073)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-1696, gnl|bosTau2|chr18 (43752177-43750549)
               

               
               42-1696, gnl|Hg17|chr19 (44590221-44591881)
               

               
               42-1696, gnl|Mm7|chr7 (25312393-25310692)
               


               
               313-520, gnl|bosTau2|chr10 (54880910-54880703)
               

               
               313-520, gnl|Hg17|chr14 (68326690-68326483)
               

               
               313-520, gnl|Mm7|chr12 (78073280-78073073)

Expressed library(ies): 24 entry(ies)

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Expressed library(ies): 24 entry(ies)

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               pla (1.47039)
               

               
               csp (0.483559)
               

               
               amn (0.417711)
               

               
               che (0.408942)
               

               
               cov (0.396458)
               

               
               fty (0.351679)
               

               
               cut (0.339847)
               

               
               jej (0.296765)
               

               
               nmm (0.265604)
               

               
               bla (0.248694)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (1.47039)
               

               
               csp (0.483559)
               

               
               amn (0.417711)
               

               
               che (0.408942)
               

               
               cov (0.396458)
               

               
               fty (0.351679)
               

               
               cut (0.339847)
               

               
               jej (0.296765)
               

               
               nmm (0.265604)
               

               
               bla (0.248694)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	198-317, - strand, RNAz p=0.985096
	558-677, - strand, RNAz p=0.630164
	718-834, - strand, RNAz p=0.510859
	1295-1403, - strand, RNAz p=0.919514
	1444-1561, - strand, RNAz p=0.936146

	42-1696, gnl\|bosTau2\|chr18 (43752177-43750549)
	42-1696, gnl\|Hg17\|chr19 (44590221-44591881)
	42-1696, gnl\|Mm7\|chr7 (25312393-25310692)

	313-520, gnl\|bosTau2\|chr10 (54880910-54880703)
	313-520, gnl\|Hg17\|chr14 (68326690-68326483)
	313-520, gnl\|Mm7\|chr12 (78073280-78073073)

	pla (1.47039)
	csp (0.483559)
	amn (0.417711)
	che (0.408942)
	cov (0.396458)
	fty (0.351679)
	cut (0.339847)
	jej (0.296765)
	nmm (0.265604)
	bla (0.248694)
	cmu (0.186393)
	nep (0.183925)
	sto (0.179824)
	duo (0.172801)
	mcp (0.170648)
	cki (0.165235)
	cje (0.165235)
	nco (0.161734)
	pty (0.142714)
	lnt (0.142308)
	ute (0.132784)
	cly (0.120642)
	jca (0.11396)
	ldo (0.0970026)