Non-Coding RNA Search

Ss1.1-Pig4-TMW8035F01.5

Sequence:


               
               CACGCAGAAGAATTAGGGGTTGGCAACAGCTCTTTGGAGAGGAAGCCCACATGACAGGAG
GAAGAGGCCTTCGCTGAGGAAAGGAATGAACCTGGTAGATATACTAGCTAGTTACAGAGT
CCCCACGTGCTCACTGGGCTTTGTTTGTGTCTCAGTTGTCTGGAGGTGGCCTAGGTTCAT
GTCAGCACAGGAAACACTGCCCGTGAGTGCCTGGTTCTGTTGCCTTGCTTAACTCTAAAG
CTCTGTGCTCTGGGCTAAAAAATCACAGAAATCTTGGATTTTTCTTCTATTTGCATATAT
AAGCCAGAGTGTTCTGTATTCTACCAACATGGGTTTTAAAAAGGAACTATGTTGTCATAA
ATTAAACTTGGGTCAGGCTGATAGGAAAGACTGGATTTTCCGTATTTCTTATTCAAATGG
CTACCATTTAGGAGAAGAAAACTACATTCGTGGTTTGGAAGAGACACACCTGAGAAGAGT
GGCCTTATCTTCACTTAATCTATAAGTTGGTTTATTTGTTTAATGTGTACATTTTTATAT
TCTCCTTTTGACATTATAACTGCTTTTCTAATCTTGTTAAATATATCTATTTTTACCAAA
GGTATTTAATATTCTTTTTTTATGACAGCCTAGATCAACTATTTTTAGCTTGGTAAATTT
TTCTAAACAGAATTGTTATAGCCAGAGGAACAAAGATGATATAAAATATTGTTGCTCTGA
CAAAAATACATGTATTTCATTCTTGTATGGTGCTAGAGCTTAGATTAATCTGCTTTTGAA
AATATTGCAGTGGGAAATGGATAGAATTTGGTGAGTTGCAAAGACTCTTTGAAAATAAAT
TATGTTTTCCACTCCTACTATTGGAGACACCAGTAGGAAGCAGCATATAGGATTAGGCAT
CCAGATCCAGGCATTACTAACCCCTAACCCTATCTTGGGAAATGTGAGCCTAGCTCAGAA
GAACATAAAGCACCTTGAAAAAAAAGAGACTTGACAGCTTCCTGACAAAGGGTGCTTTTC
CATCCTGTAGGAACACATCCTATTTATTGTGATGTTCTGGTTAGATTATCTTTAGACTCT
GTTCCATACACTTGTATAAATACATGGATATTTTTATGTACAGAAGTATATCCTTTAACC
AATTCACTTATTGTACTCTTTGGCAATGGTAAGGAAAACCAGTCAAATACTTTGCTTGTA
AAATGCTTAATATCGTGCCTAGGTTATGTGGTGACTATTTGAATTAAAATGTATTGAATC
ACCAAATAAAAGAATGCAGCTATTTCGGGGAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACGCAGAAGAATTAGGGGTTGGCAACAGCTCTTTGGAGAGGAAGCCCACATGACAGGAG
GAAGAGGCCTTCGCTGAGGAAAGGAATGAACCTGGTAGATATACTAGCTAGTTACAGAGT
CCCCACGTGCTCACTGGGCTTTGTTTGTGTCTCAGTTGTCTGGAGGTGGCCTAGGTTCAT
GTCAGCACAGGAAACACTGCCCGTGAGTGCCTGGTTCTGTTGCCTTGCTTAACTCTAAAG
CTCTGTGCTCTGGGCTAAAAAATCACAGAAATCTTGGATTTTTCTTCTATTTGCATATAT
AAGCCAGAGTGTTCTGTATTCTACCAACATGGGTTTTAAAAAGGAACTATGTTGTCATAA
ATTAAACTTGGGTCAGGCTGATAGGAAAGACTGGATTTTCCGTATTTCTTATTCAAATGG
CTACCATTTAGGAGAAGAAAACTACATTCGTGGTTTGGAAGAGACACACCTGAGAAGAGT
GGCCTTATCTTCACTTAATCTATAAGTTGGTTTATTTGTTTAATGTGTACATTTTTATAT
TCTCCTTTTGACATTATAACTGCTTTTCTAATCTTGTTAAATATATCTATTTTTACCAAA
GGTATTTAATATTCTTTTTTTATGACAGCCTAGATCAACTATTTTTAGCTTGGTAAATTT
TTCTAAACAGAATTGTTATAGCCAGAGGAACAAAGATGATATAAAATATTGTTGCTCTGA
CAAAAATACATGTATTTCATTCTTGTATGGTGCTAGAGCTTAGATTAATCTGCTTTTGAA
AATATTGCAGTGGGAAATGGATAGAATTTGGTGAGTTGCAAAGACTCTTTGAAAATAAAT
TATGTTTTCCACTCCTACTATTGGAGACACCAGTAGGAAGCAGCATATAGGATTAGGCAT
CCAGATCCAGGCATTACTAACCCCTAACCCTATCTTGGGAAATGTGAGCCTAGCTCAGAA
GAACATAAAGCACCTTGAAAAAAAAGAGACTTGACAGCTTCCTGACAAAGGGTGCTTTTC
CATCCTGTAGGAACACATCCTATTTATTGTGATGTTCTGGTTAGATTATCTTTAGACTCT
GTTCCATACACTTGTATAAATACATGGATATTTTTATGTACAGAAGTATATCCTTTAACC
AATTCACTTATTGTACTCTTTGGCAATGGTAAGGAAAACCAGTCAAATACTTTGCTTGTA
AAATGCTTAATATCGTGCCTAGGTTATGTGGTGACTATTTGAATTAAAATGTATTGAATC
ACCAAATAAAAGAATGCAGCTATTTCGGGGAGAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               645-756, - strand, RNAz p=0.866809

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               645-756, - strand, RNAz p=0.866809

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-1295, gnl|bosTau2|chr17 (22049310-22050591)
               

               
               9-1295, gnl|Hg17|chr4 (158041686-158040372)
               

               
               9-1295, gnl|Mm7|chr3 (81317617-81318858)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-1295, gnl|bosTau2|chr17 (22049310-22050591)
               

               
               9-1295, gnl|Hg17|chr4 (158041686-158040372)
               

               
               9-1295, gnl|Mm7|chr3 (81317617-81318858)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               tra (0.369276)
               

               
               ski (0.29347)
               

               
               ova (0.258264)
               

               
               spc (0.226732)
               

               
               col (0.195008)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.369276)
               

               
               ski (0.29347)
               

               
               ova (0.258264)
               

               
               spc (0.226732)
               

               
               col (0.195008)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	9-1295, gnl\|bosTau2\|chr17 (22049310-22050591)
	9-1295, gnl\|Hg17\|chr4 (158041686-158040372)
	9-1295, gnl\|Mm7\|chr3 (81317617-81318858)

	tra (0.369276)
	ski (0.29347)
	ova (0.258264)
	spc (0.226732)
	col (0.195008)
	mcp (0.170648)
	tbr (0.154178)
	isp (0.150376)
	liv (0.146284)
	hyp (0.142837)
	lnt (0.142308)
	che (0.136314)
	bla (0.124347)
	eru (0.120048)
	cty (0.10408)
	ldo (0.0970026)