Non-Coding RNA Search

Ss1.1-Pig4-TMW8035F10.5

Sequence:


               
               AGGAGGGCCTCTTGCCCATCTCTCCAGCCACCCCACCGGGCAGTGAGGAGAAGGCCGAGG
AATCCTCCGAGAAGTCCAGCTCCTCGCCCTGCGTTCCTTCCCCGGGGTCTGCTACCTCAG
ACACTCTACCTACCTCCCACTGAGGCCGCCCCAGCCCCAGACTCGACTCTTCCGGCTGGG
ACTTCTTTCCCAAAGCACATTCTTAGCTTATCTTCCTGTCCATTTACAATCTCTCTCTTC
CTCTCTGATCCTATCTGGGGAACTCCTGGCCAGGATACTGTGTTTCCAGTGAATTCTGGA
TTATAGACCGGTGTGGGGGCAGGGGAGTGCTAGCTCCGCAATGCAAATTGAGTGCCAACA
TCAATTTTCTCAAGGCCCCTAACGCCCCTAGTTTTAAGAGATTTCTTTGACAGACTCTAC
AGTTCCTTTCAGATGCCCTTTGGAAAATAGTCTCCTTTGCCAGCAGAAACATGTCAGATG
GAGGCCTCTCATCTTATATCTAACCGTGTATTTACAGTTCTCCCCTACTCTGCCCTTAAA
GTAGGATAGAGAGAGAAGAGAGTCCAGGAGCTCATGAGGAAGAGATGCACTATGAGCGTG
TTTACACAATTAATTCACCCCTTAATTTAACTCAGTTTCATGTGTGTGAGTCTGCTGGTT
GTAAATACTTTGTCCTGAAAGATTTATCTTTATACAGATTTTCTAGAAATGTTTAGATTA
AGGGATGAAAATAGGGTGGGCAAACTCTCTAAGCTGGTACAACTTTGTATGTGATTATAG
GTTAAAGACTAAAAGCTCCCAGTAAAATCAATCAGAGGCCTCAGAGGGTCGCCTCCGTTT
GTTCTTTCAGCAAGTTAAGAAAGCCTGCAGCATAAAGGGTCAGAAACCTGGCTCCCTGGG
CTGAGTCTCTCCCCATCCCCACGCCTTTCTCCTTTCTCTGGCCACACTCTTTCAAATTTG
CGCTGGAGTATTCAGGACCCAAACGTATTATTTCACACCAGCTTCTTCCCTCCACAGTTA
TTGTAGCTGGATATGATGTATTTTTAGCTCAGTTGTTAATGTGATGGATGGCACAATGAA
TGTATATTTTGTGTGATTCGTGAATAGTCTTTTGCATGTCGCACAATGTCTTGATGTTCC
CGAAGTACCACACTGAGTTTTATCAGTTATCCTTTGTGATAGTTCCCATTTCCTGTACAA
TCATGAACAGCTCCGAGATCCCAGAAGGATGTGATCCAGAGCAGAGTTTACGGGTCTTAA
GATGTCTGTAATAAATATATTCAAGTTTCAGATATGCTTAAGCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGGGCCTCTTGCCCATCTCTCCAGCCACCCCACCGGGCAGTGAGGAGAAGGCCGAGG
AATCCTCCGAGAAGTCCAGCTCCTCGCCCTGCGTTCCTTCCCCGGGGTCTGCTACCTCAG
ACACTCTACCTACCTCCCACTGAGGCCGCCCCAGCCCCAGACTCGACTCTTCCGGCTGGG
ACTTCTTTCCCAAAGCACATTCTTAGCTTATCTTCCTGTCCATTTACAATCTCTCTCTTC
CTCTCTGATCCTATCTGGGGAACTCCTGGCCAGGATACTGTGTTTCCAGTGAATTCTGGA
TTATAGACCGGTGTGGGGGCAGGGGAGTGCTAGCTCCGCAATGCAAATTGAGTGCCAACA
TCAATTTTCTCAAGGCCCCTAACGCCCCTAGTTTTAAGAGATTTCTTTGACAGACTCTAC
AGTTCCTTTCAGATGCCCTTTGGAAAATAGTCTCCTTTGCCAGCAGAAACATGTCAGATG
GAGGCCTCTCATCTTATATCTAACCGTGTATTTACAGTTCTCCCCTACTCTGCCCTTAAA
GTAGGATAGAGAGAGAAGAGAGTCCAGGAGCTCATGAGGAAGAGATGCACTATGAGCGTG
TTTACACAATTAATTCACCCCTTAATTTAACTCAGTTTCATGTGTGTGAGTCTGCTGGTT
GTAAATACTTTGTCCTGAAAGATTTATCTTTATACAGATTTTCTAGAAATGTTTAGATTA
AGGGATGAAAATAGGGTGGGCAAACTCTCTAAGCTGGTACAACTTTGTATGTGATTATAG
GTTAAAGACTAAAAGCTCCCAGTAAAATCAATCAGAGGCCTCAGAGGGTCGCCTCCGTTT
GTTCTTTCAGCAAGTTAAGAAAGCCTGCAGCATAAAGGGTCAGAAACCTGGCTCCCTGGG
CTGAGTCTCTCCCCATCCCCACGCCTTTCTCCTTTCTCTGGCCACACTCTTTCAAATTTG
CGCTGGAGTATTCAGGACCCAAACGTATTATTTCACACCAGCTTCTTCCCTCCACAGTTA
TTGTAGCTGGATATGATGTATTTTTAGCTCAGTTGTTAATGTGATGGATGGCACAATGAA
TGTATATTTTGTGTGATTCGTGAATAGTCTTTTGCATGTCGCACAATGTCTTGATGTTCC
CGAAGTACCACACTGAGTTTTATCAGTTATCCTTTGTGATAGTTCCCATTTCCTGTACAA
TCATGAACAGCTCCGAGATCCCAGAAGGATGTGATCCAGAGCAGAGTTTACGGGTCTTAA
GATGTCTGTAATAAATATATTCAAGTTTCAGATATGCTTAAGCAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q804C5_CHICK

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q804C5_CHICK

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-269, - strand, RNAz p=0.995295

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-269, - strand, RNAz p=0.995295

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1304, gnl|bosTau2|chr4 (37159067-37160392)
               

               
               1-1304, gnl|Hg17|chr7 (26907441-26906152)
               

               
               1-1304, gnl|Mm7|chr6 (52120131-52118834)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1304, gnl|bosTau2|chr4 (37159067-37160392)
               

               
               1-1304, gnl|Hg17|chr7 (26907441-26906152)
               

               
               1-1304, gnl|Mm7|chr6 (52120131-52118834)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	1-1304, gnl\|bosTau2\|chr4 (37159067-37160392)
	1-1304, gnl\|Hg17\|chr7 (26907441-26906152)
	1-1304, gnl\|Mm7\|chr6 (52120131-52118834)