Non-Coding RNA Search

Ss1.1-Pig4-TMW8035F12.3

Sequence:


               
               GGTCTGGTCAAATCAGTGGTTTGTGTATAGATTTTTTTTTAATTTAGAATTAAAATTTTT
AAACTGGAAGATAATTATAATTTTGAAAACTTTTTGGAGATTATCACATTTAGTTTATAC
ATCATACACAAGAAAGCTTTTTGTCTTGTCTTTTTTTCTGACAGCACTAGTAGCAGTTTT
CATATTTTGGTCATAGTTTCAGCATTATAACATGTGAATTATAGGGTTTCATGCTGGTTT
CCAGATTTTATTGTTTGTGTACAATGGAACTTTAAGTCATATATACACATACATATATAT
ATATTATTCTAAGGGGGGGAAATGTTATATTTTTCTGTTTCTATGAGAGATGAATACAGT
GGATACTTTTTCTATTGGTAATGATTGAGTTCACCTCTTTCAGAAGACAGTTTCTTTCTC
TTCTGAGTAAATTCAAATAAAATCTGGCCCTTGTGAAACCCTGGAAATCTTAAGTCTGTT
GAAATACCAGGTTAAACACATTCCAAGACATCTGTTCAAACTAAAATTCTTTTGTATACT
TCTGAGGTGCCTGAGAAAAAGACTTCATTATTTATGAGAAAATGTGCTTTATCTTGGAAA
TTGTGTTCACACATTAGCTTACTATTTTGTAGAATGAATGCTTCTAAAGCTGACATGAGA
CCATCTCAGAAGGACCGGACAGGTTCCTTTACCTTTTGCTTGCTTTTCTGAACATTGTGA
ATATTACACATTTCTTTCTAAATTATTCTAGAGTATGCAAATGTCAGTGATATGATGAAA
CACCACTGTACTGGAAGAATTAATATATTACTTTAGTAATGTACCCGAGCTAAATGATGA
AGCTTTAGAGGTGCATAGAAGCCACCATAATTTGTATGACATTTTGAAGTGAATTAAATA
TTTTTGAACATGCTTCTTCGACAGCCAGTGTTATATTTTTCAGATCAACACAAAGCACAA
TGATTACTCTAAACTCAATATTTTCAAATTCACATTTAAAGTCATGCAAGCTTCAACTTC
CCTGTCTAAATTACTGGCTGCCAAATTTATACCTGTTTCTTCAGCTGTACCTTTTGATAT
TTAGAATTTTTAAATTTCTGTAAAGTAGATTTTGTAGAATGTAATGTGTTCACTGCCTTT
GTGAAACGGTATATAATTGTATAATTTCTGTGTGTAAACTGAATGCTTGGGCTTTCAATA
CAGTATTCATATAAAGCAATAAATATTAATGTTATAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCTGGTCAAATCAGTGGTTTGTGTATAGATTTTTTTTTAATTTAGAATTAAAATTTTT
AAACTGGAAGATAATTATAATTTTGAAAACTTTTTGGAGATTATCACATTTAGTTTATAC
ATCATACACAAGAAAGCTTTTTGTCTTGTCTTTTTTTCTGACAGCACTAGTAGCAGTTTT
CATATTTTGGTCATAGTTTCAGCATTATAACATGTGAATTATAGGGTTTCATGCTGGTTT
CCAGATTTTATTGTTTGTGTACAATGGAACTTTAAGTCATATATACACATACATATATAT
ATATTATTCTAAGGGGGGGAAATGTTATATTTTTCTGTTTCTATGAGAGATGAATACAGT
GGATACTTTTTCTATTGGTAATGATTGAGTTCACCTCTTTCAGAAGACAGTTTCTTTCTC
TTCTGAGTAAATTCAAATAAAATCTGGCCCTTGTGAAACCCTGGAAATCTTAAGTCTGTT
GAAATACCAGGTTAAACACATTCCAAGACATCTGTTCAAACTAAAATTCTTTTGTATACT
TCTGAGGTGCCTGAGAAAAAGACTTCATTATTTATGAGAAAATGTGCTTTATCTTGGAAA
TTGTGTTCACACATTAGCTTACTATTTTGTAGAATGAATGCTTCTAAAGCTGACATGAGA
CCATCTCAGAAGGACCGGACAGGTTCCTTTACCTTTTGCTTGCTTTTCTGAACATTGTGA
ATATTACACATTTCTTTCTAAATTATTCTAGAGTATGCAAATGTCAGTGATATGATGAAA
CACCACTGTACTGGAAGAATTAATATATTACTTTAGTAATGTACCCGAGCTAAATGATGA
AGCTTTAGAGGTGCATAGAAGCCACCATAATTTGTATGACATTTTGAAGTGAATTAAATA
TTTTTGAACATGCTTCTTCGACAGCCAGTGTTATATTTTTCAGATCAACACAAAGCACAA
TGATTACTCTAAACTCAATATTTTCAAATTCACATTTAAAGTCATGCAAGCTTCAACTTC
CCTGTCTAAATTACTGGCTGCCAAATTTATACCTGTTTCTTCAGCTGTACCTTTTGATAT
TTAGAATTTTTAAATTTCTGTAAAGTAGATTTTGTAGAATGTAATGTGTTCACTGCCTTT
GTGAAACGGTATATAATTGTATAATTTCTGTGTGTAAACTGAATGCTTGGGCTTTCAATA
CAGTATTCATATAAAGCAATAAATATTAATGTTATAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               311-509, - strand, RNAz p=0.986484
               

               
               1120-1239, - strand, RNAz p=0.51077

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               311-509, - strand, RNAz p=0.986484
               

               
               1120-1239, - strand, RNAz p=0.51077

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               368-462, + strand, RNAmicro p=0.992442

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               368-462, + strand, RNAmicro p=0.992442

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-1239, gnl|bosTau2|chr22 (21133751-21134982)
               

               
               1-1239, gnl|Hg17|chr3 (73197790-73199034)
               

               
               1-1239, gnl|Mm7|chr6 (100956968-100958194)
               


               
               360-841, gnl|bosTau2|chr12 (11534056-11533593)
               

               
               360-841, gnl|Hg17|chr3 (73198157-73198634)
               

               
               360-841, gnl|Mm7|chrX (70621522-70622048)
               


               
               1035-1235, gnl|bosTau2|chr12 (11533552-11533363)
               

               
               1035-1235, gnl|Hg17|chr3 (73198830-73199030)
               

               
               1035-1235, gnl|Mm7|chrX (70622192-70622390)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1239, gnl|bosTau2|chr22 (21133751-21134982)
               

               
               1-1239, gnl|Hg17|chr3 (73197790-73199034)
               

               
               1-1239, gnl|Mm7|chr6 (100956968-100958194)
               


               
               360-841, gnl|bosTau2|chr12 (11534056-11533593)
               

               
               360-841, gnl|Hg17|chr3 (73198157-73198634)
               

               
               360-841, gnl|Mm7|chrX (70621522-70622048)
               


               
               1035-1235, gnl|bosTau2|chr12 (11533552-11533363)
               

               
               1035-1235, gnl|Hg17|chr3 (73198830-73199030)
               

               
               1035-1235, gnl|Mm7|chrX (70622192-70622390)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

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               lin (0.582411)
               

               
               eye (0.341006)
               

               
               liv (0.292569)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.582411)
               

               
               eye (0.341006)
               

               
               liv (0.292569)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

	311-509, - strand, RNAz p=0.986484
	1120-1239, - strand, RNAz p=0.51077

	1-1239, gnl\|bosTau2\|chr22 (21133751-21134982)
	1-1239, gnl\|Hg17\|chr3 (73197790-73199034)
	1-1239, gnl\|Mm7\|chr6 (100956968-100958194)

	360-841, gnl\|bosTau2\|chr12 (11534056-11533593)
	360-841, gnl\|Hg17\|chr3 (73198157-73198634)
	360-841, gnl\|Mm7\|chrX (70621522-70622048)

	1035-1235, gnl\|bosTau2\|chr12 (11533552-11533363)
	1035-1235, gnl\|Hg17\|chr3 (73198830-73199030)
	1035-1235, gnl\|Mm7\|chrX (70622192-70622390)

	lin (0.582411)
	eye (0.341006)
	liv (0.292569)
	mgp (0.230681)
	hea (0.204499)
	ldo (0.194005)
	sag (0.182715)
	mgm (0.180343)
	gul (0.177588)
	mga (0.160205)
	isp (0.150376)
	hyp (0.142837)
	ste (0.135208)
	kid (0.129735)
	ova (0.129132)
	ese (0.126502)
	tra (0.123092)
	clu (0.119646)
	pgl (0.118483)
	eje (0.0988338)