Non-Coding RNA Search

Ss1.1-Pig4-TMW8035F19.5

Sequence:


               
               TTTTCGGTGGTGAATACATGTTGTTAGAAGATGTCTTGTATGGTCTGAATCTTTTTCATT
ATAACTTAAGACTATAAAAAAGAAAAAAAAAACAAAAAGTAGGAACCAAACATAAAAGGT
CTAGTAAAGCCAAAAATTAATTTCATATTGATTTTGAAGTGATCTAGCTGAGTTTTTACA
CTGAAAGCAAAGATTATAGCAATTGTAGTCCATGGTATTTATTTTCAGTCAAACCAAAGT
TACATATAATTCTGCCTCTGCTGATACGGGATATTAACACTAACAATACACTCCCTTTCA
AAGACTTGCACAGGCCAAATTGTTGGAACGCTGGTTTTCTCGACAACTCCAAACCCCAAA
ACTAGGATAATGCGTTAATGGTGTAGTGGAAAATAGCATAGTCAGATGTTTGCTTAAAGC
CTAGAAACTTTCCGTGTTGCTTTTCATGTGCTGTGCCAAGTCTTGATAATACTTTTCCCC
CAACCAAGGGACCTCATAACCTGATTATGGTTATTGCTTTACAAACAGTTTTGACAGAAG
GTGGCTGCTAGAGCTTAACATACGTACCAGTTCCATGTGATGGAGCTGGTTCTTGCAAAC
TAAGCTCCTCATTTATTCTTTGCTGAAGTCAGCAAAAGAGTTAGAGAGATACCCAGTCAT
CTATCACACCAAATAAAAGGACATAACGGCTTTCAAAAGGGTTTTCCCACTTACCCAAAA
GGCTTTCTGAAAGCTTCTACCTCTGCAAAAAAAAAAGAAAAAAAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCGGTGGTGAATACATGTTGTTAGAAGATGTCTTGTATGGTCTGAATCTTTTTCATT
ATAACTTAAGACTATAAAAAAGAAAAAAAAAACAAAAAGTAGGAACCAAACATAAAAGGT
CTAGTAAAGCCAAAAATTAATTTCATATTGATTTTGAAGTGATCTAGCTGAGTTTTTACA
CTGAAAGCAAAGATTATAGCAATTGTAGTCCATGGTATTTATTTTCAGTCAAACCAAAGT
TACATATAATTCTGCCTCTGCTGATACGGGATATTAACACTAACAATACACTCCCTTTCA
AAGACTTGCACAGGCCAAATTGTTGGAACGCTGGTTTTCTCGACAACTCCAAACCCCAAA
ACTAGGATAATGCGTTAATGGTGTAGTGGAAAATAGCATAGTCAGATGTTTGCTTAAAGC
CTAGAAACTTTCCGTGTTGCTTTTCATGTGCTGTGCCAAGTCTTGATAATACTTTTCCCC
CAACCAAGGGACCTCATAACCTGATTATGGTTATTGCTTTACAAACAGTTTTGACAGAAG
GTGGCTGCTAGAGCTTAACATACGTACCAGTTCCATGTGATGGAGCTGGTTCTTGCAAAC
TAAGCTCCTCATTTATTCTTTGCTGAAGTCAGCAAAAGAGTTAGAGAGATACCCAGTCAT
CTATCACACCAAATAAAAGGACATAACGGCTTTCAAAAGGGTTTTCCCACTTACCCAAAA
GGCTTTCTGAAAGCTTCTACCTCTGCAAAAAAAAAAGAAAAAAAAAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               495-766, - strand, RNAz p=0.99542

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               495-766, - strand, RNAz p=0.99542

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               495-746, DA374193 BRTHA2 Homo sapiens cDNA clone BRTHA2005063 5', mRNA 
(dbj|DA374193.1|), blast E-value=0, identity=97.23% 
               

               
               495-746, DA647276 MAMMA1 Homo sapiens cDNA clone MAMMA1002871 5', mRNA 
(dbj|DA647276.1|), blast E-value=0, identity=96.84% 
               

               
               495-746, 602625656F1 NCI_CGAP_Skn4 Homo sapiens cDNA clone IMAGE 
(gb|BG677954.1|), blast E-value=0, identity=97.23% 
               

               
               495-746, df06c12.w1 Morton Fetal Cochlea Homo sapiens cDNA clone 
(gb|BI491269.1|), blast E-value=0, identity=97.23% 
               

               
               495-746, df08b12.w1 Morton Fetal Cochlea Homo sapiens cDNA clone 
(gb|BI491394.1|), blast E-value=0, identity=97.23% 
               

               
               495-746, ha79c06.g1 Canis cDNAs from testes cells Canis familiaris cDNA 
(gb|BM537201.1|), blast E-value=0, identity=98.81%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               495-746, DA374193 BRTHA2 Homo sapiens cDNA clone BRTHA2005063 5', mRNA 
(dbj|DA374193.1|), blast E-value=0, identity=97.23% 
               

               
               495-746, DA647276 MAMMA1 Homo sapiens cDNA clone MAMMA1002871 5', mRNA 
(dbj|DA647276.1|), blast E-value=0, identity=96.84% 
               

               
               495-746, 602625656F1 NCI_CGAP_Skn4 Homo sapiens cDNA clone IMAGE 
(gb|BG677954.1|), blast E-value=0, identity=97.23% 
               

               
               495-746, df06c12.w1 Morton Fetal Cochlea Homo sapiens cDNA clone 
(gb|BI491269.1|), blast E-value=0, identity=97.23% 
               

               
               495-746, df08b12.w1 Morton Fetal Cochlea Homo sapiens cDNA clone 
(gb|BI491394.1|), blast E-value=0, identity=97.23% 
               

               
               495-746, ha79c06.g1 Canis cDNAs from testes cells Canis familiaris cDNA 
(gb|BM537201.1|), blast E-value=0, identity=98.81%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-766, gnl|bosTau2|chr4 (30720718-30719947)
               

               
               1-766, gnl|Hg17|chr7 (113925185-113925946)
               

               
               1-766, gnl|Mm7|chr6 (15381045-15381830)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-766, gnl|bosTau2|chr4 (30720718-30719947)
               

               
               1-766, gnl|Hg17|chr7 (113925185-113925946)
               

               
               1-766, gnl|Mm7|chr6 (15381045-15381830)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               sin (0.174948)
               

               
               bla (0.124347)
               

               
               clu (0.119646)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               bla (0.124347)
               

               
               clu (0.119646)

	495-746, DA374193 BRTHA2 Homo sapiens cDNA clone BRTHA2005063 5', mRNA (dbj\|DA374193.1\|), blast E-value=0, identity=97.23%
	495-746, DA647276 MAMMA1 Homo sapiens cDNA clone MAMMA1002871 5', mRNA (dbj\|DA647276.1\|), blast E-value=0, identity=96.84%
	495-746, 602625656F1 NCI_CGAP_Skn4 Homo sapiens cDNA clone IMAGE (gb\|BG677954.1\|), blast E-value=0, identity=97.23%
	495-746, df06c12.w1 Morton Fetal Cochlea Homo sapiens cDNA clone (gb\|BI491269.1\|), blast E-value=0, identity=97.23%
	495-746, df08b12.w1 Morton Fetal Cochlea Homo sapiens cDNA clone (gb\|BI491394.1\|), blast E-value=0, identity=97.23%
	495-746, ha79c06.g1 Canis cDNAs from testes cells Canis familiaris cDNA (gb\|BM537201.1\|), blast E-value=0, identity=98.81%

	1-766, gnl\|bosTau2\|chr4 (30720718-30719947)
	1-766, gnl\|Hg17\|chr7 (113925185-113925946)
	1-766, gnl\|Mm7\|chr6 (15381045-15381830)