Non-Coding RNA Search

Ss1.1-Pig4-TMW8035F24.3

Sequence:


               
               GCCAGCCCAGGAGGTGCCGAGAGGCCAGAGCTGTAGCTCTCTGCAGCCCACGCGGGGATG
TCTCCCAGCCTTCAGGAAGGTGCTCGGCTTGCCGAAAGCAAACCCTCACCCTGCTCCTTT
TCGATTGAGAGCATCTTAGGACTGGACCAGAAGAAAGACTGTGTTCCATCAACGAAACCC
CACAGGCCCTGGGCAGATACCTGCAGCTCTTCAGGGAAAGATGTTAACTTTTGTCTACAC
GTCCCGAGTCTTCCTGATGGAATCTCATTACCTTGTAATGTGGATCACTCAGTGCCAGAA
GAAGGAGTTTTGAAATGTGAAAATTACTTTTCAGCCTCAGAAAGACTTTCTTTGAAAAGA
GAATTGAGTTGGTATAGAGGCCGAAGACCCAGAACTGCTTTTACGCAAAACCAGATTGAA
ATGTTGGAAAATGTCTTTAGAGTAAACTGCTATCCTGGCATTGATATCAGAGAAGACTTA
GCCCGAAAATTGAATCTAGAAGAGGATAGAATCCAGATATGGTTCCAAAATCGGCGTGCA
AAGCTGAAAAGATCCCATCGAGAATCACAATTTCTAATGGCAAAAAAAAGTTTCAACACT
GATCTCCTGGAATAGATAGAAAACTAAACATTTGAAATTATCTTCTAATTGCAGAATGTG
AAGAATCAATGGAAATATCCAGTGTTAAAAATGTGATGTTTTCTTTTCTGTTTAATCTGA
ATAATGTCATTTTTTTCAGAAAATATATTGTAAATAATTACTATTATTATAACATGGTAC
CTGTTATACTTGGGCACTTTTAGTTACAATAAAGGCCTTTCCTGTATATTTTAATAAACA
TTTTCAGAAAAAGCCAGCTATTTTTTGTAAGCAAATTTAATCTAATAGATTAGTTTACTA
AAATCAGTACATTCATGACTAACTGACCCCACAGGCTGGATTCCATTTATAAAGTAATTC
AAGTCAAATAATCTGAAGAATGGCACAAAGATGTACATTTTGAAAACATGATTATACTTA
AATATAGTACGGAGTAGGATTTATTAATTAATCTTTTGTTTTTCTTCATTTCTGGCAGAA
AGCAGTGAGAATTTTTCACTGCATATCAATACAAACCCTTATAGCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAGCCCAGGAGGTGCCGAGAGGCCAGAGCTGTAGCTCTCTGCAGCCCACGCGGGGATG
TCTCCCAGCCTTCAGGAAGGTGCTCGGCTTGCCGAAAGCAAACCCTCACCCTGCTCCTTT
TCGATTGAGAGCATCTTAGGACTGGACCAGAAGAAAGACTGTGTTCCATCAACGAAACCC
CACAGGCCCTGGGCAGATACCTGCAGCTCTTCAGGGAAAGATGTTAACTTTTGTCTACAC
GTCCCGAGTCTTCCTGATGGAATCTCATTACCTTGTAATGTGGATCACTCAGTGCCAGAA
GAAGGAGTTTTGAAATGTGAAAATTACTTTTCAGCCTCAGAAAGACTTTCTTTGAAAAGA
GAATTGAGTTGGTATAGAGGCCGAAGACCCAGAACTGCTTTTACGCAAAACCAGATTGAA
ATGTTGGAAAATGTCTTTAGAGTAAACTGCTATCCTGGCATTGATATCAGAGAAGACTTA
GCCCGAAAATTGAATCTAGAAGAGGATAGAATCCAGATATGGTTCCAAAATCGGCGTGCA
AAGCTGAAAAGATCCCATCGAGAATCACAATTTCTAATGGCAAAAAAAAGTTTCAACACT
GATCTCCTGGAATAGATAGAAAACTAAACATTTGAAATTATCTTCTAATTGCAGAATGTG
AAGAATCAATGGAAATATCCAGTGTTAAAAATGTGATGTTTTCTTTTCTGTTTAATCTGA
ATAATGTCATTTTTTTCAGAAAATATATTGTAAATAATTACTATTATTATAACATGGTAC
CTGTTATACTTGGGCACTTTTAGTTACAATAAAGGCCTTTCCTGTATATTTTAATAAACA
TTTTCAGAAAAAGCCAGCTATTTTTTGTAAGCAAATTTAATCTAATAGATTAGTTTACTA
AAATCAGTACATTCATGACTAACTGACCCCACAGGCTGGATTCCATTTATAAAGTAATTC
AAGTCAAATAATCTGAAGAATGGCACAAAGATGTACATTTTGAAAACATGATTATACTTA
AATATAGTACGGAGTAGGATTTATTAATTAATCTTTTGTTTTTCTTCATTTCTGGCAGAA
AGCAGTGAGAATTTTTCACTGCATATCAATACAAACCCTTATAGCATT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|57101538|ref|XP_541834.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|57101538|ref|XP_541834.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               788-889, - strand, RNAz p=0.830014

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               788-889, - strand, RNAz p=0.830014

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               28-215, gnl|bosTau2|chr22 (33121165-33120978)
               

               
               28-215, gnl|Hg17|chr3 (57209016-57208829)
               

               
               28-215, gnl|Mm7|chr14 (24433460-24433644)
               


               
               515-1126, gnl|bosTau2|chr22 (33119997-33119374)
               

               
               515-1126, gnl|Hg17|chr3 (57207365-57206743)
               

               
               515-1126, gnl|Mm7|chr14 (24434771-24435662)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-215, gnl|bosTau2|chr22 (33121165-33120978)
               

               
               28-215, gnl|Hg17|chr3 (57209016-57208829)
               

               
               28-215, gnl|Mm7|chr14 (24433460-24433644)
               


               
               515-1126, gnl|bosTau2|chr22 (33119997-33119374)
               

               
               515-1126, gnl|Hg17|chr3 (57207365-57206743)
               

               
               515-1126, gnl|Mm7|chr14 (24434771-24435662)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               tes (0.207814)
               

               
               ret (0.128733)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               ret (0.128733)
               

               
               jca (0.11396)

	28-215, gnl\|bosTau2\|chr22 (33121165-33120978)
	28-215, gnl\|Hg17\|chr3 (57209016-57208829)
	28-215, gnl\|Mm7\|chr14 (24433460-24433644)

	515-1126, gnl\|bosTau2\|chr22 (33119997-33119374)
	515-1126, gnl\|Hg17\|chr3 (57207365-57206743)
	515-1126, gnl\|Mm7\|chr14 (24434771-24435662)