Non-Coding RNA Search

Ss1.1-Pig4-TMW8035G12.3

Sequence:


               
               TGTTTTTTATACATAGACTTGTGTGTGTCCACCTACCTTCCATCGTCCACATTTAACCTT
GAAAGATGTGCATTGGGGAATATCAGAAAATTGAGTTCATGGCCAAGAAGATGTAAAATG
TAAAAAGCACAGCAAAACTGCATCGTACTTAACCACATCAAGCAAATCTATTAGGAAAAA
AAGCACTTTTCTAAATGCTCAAATGTTACCAGAATACTATATTTATATAAGTAATCCTCT
CTCTATTAACAGCCAGGATTTGCTGTTAGAAATAACTCTTGTGAGTTTTATAGTGTGCTT
TTTGGGGGTTCTAATCATTTCAGCAGTAGTATATTTTAAACAGCAGTATTACTATAAGCA
GTGTGCTTCAAAATGTGAATTAACTTGTTGAAACTGTGGTTTTAACATCTATGTGATTTG
TGTATAAGGCATTTGCTTTCCATTAGCAAAATACTTCATTATAAAGTTCACTAGTGCAGA
TTGCAATTCCATGAGCAATGTTTCCTATTGAATATCAGCTACTGTCTAAAATAAACATAT
CATGCAGCAGCTCAGCCTTTATCAGGAAATTCTCTGGGGCAAGTTGCTGAAAAAGTGCAC
AAAGTTATGAAAGGCGTAAAGGTATGCTGCCGATAACTAGCCATTATTCTATGTGTTATT
AAAATATTTGCCAGTTCTGTTAAAAGCAGAGGAGAAATTAGACACTAAGGATCTCTTTGT
GAATTCTTTGTTCTCTAGATTGCTGTTTATATGTAAGAATTTTATTGCTTATGTGGCATA
CAATATTTATAACTATATACTTTATAGAAGTACAGTATGAAAGTCAGTGGTATATAAACA
CTGTATATATCCTGTGAAATGTGCTCTCGTACGAAATAAATATACCTGTCATTACGTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTTTTATACATAGACTTGTGTGTGTCCACCTACCTTCCATCGTCCACATTTAACCTT
GAAAGATGTGCATTGGGGAATATCAGAAAATTGAGTTCATGGCCAAGAAGATGTAAAATG
TAAAAAGCACAGCAAAACTGCATCGTACTTAACCACATCAAGCAAATCTATTAGGAAAAA
AAGCACTTTTCTAAATGCTCAAATGTTACCAGAATACTATATTTATATAAGTAATCCTCT
CTCTATTAACAGCCAGGATTTGCTGTTAGAAATAACTCTTGTGAGTTTTATAGTGTGCTT
TTTGGGGGTTCTAATCATTTCAGCAGTAGTATATTTTAAACAGCAGTATTACTATAAGCA
GTGTGCTTCAAAATGTGAATTAACTTGTTGAAACTGTGGTTTTAACATCTATGTGATTTG
TGTATAAGGCATTTGCTTTCCATTAGCAAAATACTTCATTATAAAGTTCACTAGTGCAGA
TTGCAATTCCATGAGCAATGTTTCCTATTGAATATCAGCTACTGTCTAAAATAAACATAT
CATGCAGCAGCTCAGCCTTTATCAGGAAATTCTCTGGGGCAAGTTGCTGAAAAAGTGCAC
AAAGTTATGAAAGGCGTAAAGGTATGCTGCCGATAACTAGCCATTATTCTATGTGTTATT
AAAATATTTGCCAGTTCTGTTAAAAGCAGAGGAGAAATTAGACACTAAGGATCTCTTTGT
GAATTCTTTGTTCTCTAGATTGCTGTTTATATGTAAGAATTTTATTGCTTATGTGGCATA
CAATATTTATAACTATATACTTTATAGAAGTACAGTATGAAAGTCAGTGGTATATAAACA
CTGTATATATCCTGTGAAATGTGCTCTCGTACGAAATAAATATACCTGTCATTACGTTGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               5-895, gnl|bosTau2|chr1 (332269-331367)
               

               
               5-895, gnl|Hg17|chr21 (32923826-32922944)
               

               
               5-895, gnl|Mm7|chr16 (90986834-90986003)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-895, gnl|bosTau2|chr1 (332269-331367)
               

               
               5-895, gnl|Hg17|chr21 (32923826-32922944)
               

               
               5-895, gnl|Mm7|chr16 (90986834-90986003)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               fco (0.78604)
               

               
               spc (0.566829)
               

               
               fty (0.351679)
               

               
               nbm (0.198649)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.78604)
               

               
               spc (0.566829)
               

               
               fty (0.351679)
               

               
               nbm (0.198649)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

	5-895, gnl\|bosTau2\|chr1 (332269-331367)
	5-895, gnl\|Hg17\|chr21 (32923826-32922944)
	5-895, gnl\|Mm7\|chr16 (90986834-90986003)

	fco (0.78604)
	spc (0.566829)
	fty (0.351679)
	nbm (0.198649)
	aor (0.195274)
	gul (0.177588)
	tbr (0.154178)
	ski (0.146735)
	liv (0.146284)
	spl (0.143184)
	lnt (0.142308)
	pla (0.133672)
	ret (0.128733)
	thg (0.126791)
	pgl (0.118483)