Ss1.1-Pig4-TMW8035H04.5
|
GGAAAAAGTGTCCCACTGTTTTACAAATTGAATAACTCCTGATTGTCACAGAAGGAACCC
TGGACTAGGAGCCGCTGCCCAGAGCTCGCCGCGCCGCTTCCCGCTAGCAGCCGCGTACCC
TGCTCCTCTCCGACATGGCAAAAAGACCCACAGAGACTGAGCGTTGCATTGAATCTCTGA
TTGCTATTTTCCAAAAGCATGCTGGAAGGGACGGTAACAACACGAAAATCTCCAAGACCG
AGTTCCTAATTTTCATGAATACAGAGCTGGCTGCCTTCACACAGAACCAGAAGGACCCTG
GTGTCCTTGACCGCATGATGAAGAAATTGGACCTCGACTCTGACGGGCAGCTAGATTTCC
AAGAATTTCTTAATCTTATTGGCGGCCTGGCCATAGCTTGCCATGACTCCTTTATTAAGT
CTACCCAGAAGTAAATCTGAGGAGCCTTTGGGCCTGGCCTCCAGACCCACCCCTTTCCTC
CTAGTCTCCCAGGTATCATCTGTTCCTCACAGCCCACACATACTCTGAGCCCAGCACACC
CACCAGCCCATGCAGGCCACGCCTGCTGGTCGTAATAAAGCAGTATCGTTTTTTAAAGCA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGAAAAAGTGTCCCACTGTTTTACAAATTGAATAACTCCTGATTGTCACAGAAGGAACCC
TGGACTAGGAGCCGCTGCCCAGAGCTCGCCGCGCCGCTTCCCGCTAGCAGCCGCGTACCC
TGCTCCTCTCCGACATGGCAAAAAGACCCACAGAGACTGAGCGTTGCATTGAATCTCTGA
TTGCTATTTTCCAAAAGCATGCTGGAAGGGACGGTAACAACACGAAAATCTCCAAGACCG
AGTTCCTAATTTTCATGAATACAGAGCTGGCTGCCTTCACACAGAACCAGAAGGACCCTG
GTGTCCTTGACCGCATGATGAAGAAATTGGACCTCGACTCTGACGGGCAGCTAGATTTCC
AAGAATTTCTTAATCTTATTGGCGGCCTGGCCATAGCTTGCCATGACTCCTTTATTAAGT
CTACCCAGAAGTAAATCTGAGGAGCCTTTGGGCCTGGCCTCCAGACCCACCCCTTTCCTC
CTAGTCTCCCAGGTATCATCTGTTCCTCACAGCCCACACATACTCTGAGCCCAGCACACC
CACCAGCCCATGCAGGCCACGCCTGCTGGTCGTAATAAAGCAGTATCGTTTTTTAAAGCA
AAAAAAAAAAAA
|
|
gi|51592139|ref|NP_001004045.1| |
Protein identifier
|
gi|51592139|ref|NP_001004045.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
282-600, gnl|bosTau2|chr3 (14744133-14744452) |
|
282-600, gnl|canFam2|chr17 (64097507-64097721) |
|
282-600, gnl|dasNov1|scaffold_6917 (10696-10901) |
|
282-600, gnl|echTel1|scaffold_91390 (1933-2114) |
|
282-600, gnl|hg17|chr1 (148818055-148818257) |
|
282-600, gnl|Hg17|chr1 (148818375-148818059) |
|
282-600, gnl|loxAfr1|scaffold_28519 (8661-8864) |
|
282-600, gnl|mm7|chr3 (93628008-93627825) |
|
282-600, gnl|Mm7|chr3 (93627705-93628002) |
|
282-600, gnl|monDom2|scaffold_44 (5332093-5332297) |
|
282-600, gnl|oryCun1|scaffold_198276 (147148-147350) |
|
282-600, gnl|panTro1|chr1_random (22922000-22922202) |
|
282-600, gnl|rheMac2|chr1 (130528300-130528506) |
|
282-600, gnl|rn3|chr2 (186572165-186571979) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
282-600, gnl|bosTau2|chr3 (14744133-14744452) |
|
282-600, gnl|canFam2|chr17 (64097507-64097721) |
|
282-600, gnl|dasNov1|scaffold_6917 (10696-10901) |
|
282-600, gnl|echTel1|scaffold_91390 (1933-2114) |
|
282-600, gnl|hg17|chr1 (148818055-148818257) |
|
282-600, gnl|Hg17|chr1 (148818375-148818059) |
|
282-600, gnl|loxAfr1|scaffold_28519 (8661-8864) |
|
282-600, gnl|mm7|chr3 (93628008-93627825) |
|
282-600, gnl|Mm7|chr3 (93627705-93628002) |
|
282-600, gnl|monDom2|scaffold_44 (5332093-5332297) |
|
282-600, gnl|oryCun1|scaffold_198276 (147148-147350) |
|
282-600, gnl|panTro1|chr1_random (22922000-22922202) |
|
282-600, gnl|rheMac2|chr1 (130528300-130528506) |
|
282-600, gnl|rn3|chr2 (186572165-186571979) |
|
amn (2.08855) |
|
ton (1.2285) |
|
cov (1.05722) |
|
nep (0.919625) |
|
nca (0.821243) |
|
elu (0.770713) |
|
cbr (0.767853) |
|
nlu (0.766724) |
|
nbm (0.695272) |
|
jca (0.683761) |
|
eru (0.60024) |
|
med (0.58126) |
|
fty (0.527519) |
|
ese (0.506009) |
|
eje (0.494169) |
|
cly (0.482567) |
|
cli (0.458435) |
|
cag (0.453583) |
|
nms (0.427716) |
|
ova (0.387397) |
|
eep (0.367692) |
|
clu (0.358938) |
|
duo (0.345602) |
|
csp (0.322373) |
|
cga (0.279096) |
|
nmm (0.265604) |
|
hea (0.204499) |
|
col (0.195008) |
|
fbs (0.175346) |
|
cut (0.169924) |
|
nje (0.16592) |
|
nco (0.161734) |
|
mga (0.160205) |
|
bfe (0.149858) |
|
pty (0.142714) |
|
csk (0.140746) |
|
ute (0.132784) |
|
ecc (0.115035) |
|
cbl (0.114797) |
|
spc (0.113366) |
|
amn (2.08855) |
|
ton (1.2285) |
|
cov (1.05722) |
|
nep (0.919625) |
|
nca (0.821243) |
|
elu (0.770713) |
|
cbr (0.767853) |
|
nlu (0.766724) |
|
nbm (0.695272) |
|
jca (0.683761) |
|
eru (0.60024) |
|
med (0.58126) |
|
fty (0.527519) |
|
ese (0.506009) |
|
eje (0.494169) |
|
cly (0.482567) |
|
cli (0.458435) |
|
cag (0.453583) |
|
nms (0.427716) |
|
ova (0.387397) |
|
eep (0.367692) |
|
clu (0.358938) |
|
duo (0.345602) |
|
csp (0.322373) |
|
cga (0.279096) |
|
nmm (0.265604) |
|
hea (0.204499) |
|
col (0.195008) |
|
fbs (0.175346) |
|
cut (0.169924) |
|
nje (0.16592) |
|
nco (0.161734) |
|
mga (0.160205) |
|
bfe (0.149858) |
|
pty (0.142714) |
|
csk (0.140746) |
|
ute (0.132784) |
|
ecc (0.115035) |
|
cbl (0.114797) |
|
spc (0.113366) |
