Non-Coding RNA Search

Ss1.1-Pig4-TMW8035H09.3

Sequence:


               
               GCTGGGCCTGCCATCATTCAAACCGGGGTTTGCAGAGCAGTCCCTGATGAAGAATGCCAT
AAAGACGTCGGAGGAGTCCTGGATTGAACAGCAGATGCTGGAAGACAAGAAGCGGGCCAC
AGACTGGGAGGCCACAAACGAGGCCATTGAGGAGCAGGTGGCTCGGGAGTCCTACCTGCA
GTGGCTACGGGATCAAGAGAAACAGGCCCGCCAAGTCCGTGGCCCCAGCCAGCCCCGGAA
AGCCAGCGCCACATGCAGTTCTGCCACAGCAGCAGCCTCCAGTGGTCTGGAGGAGTGGAC
CAGCCGGTCCCCGCGGCAGCGGAGTTCAGCCTCGTCACCCGAGCACCCTGAGCTACATGC
TGAGCTGGGCATCAAGCCCCCTTCCCCAGGCACTGTCTTAGCTCTTGCCAAACCTCCTTC
GCCCTGTGCACCAGGTACAAGCAGCCAGTTCTCGACAGGGGCCGACCGGGCTACTTCCCC
CCTCGTGTCCCTCTACCCTGCTCTGGAATGCCGGGCCCTCATTCAGCAGATGTCCCCCTC
TGCCTTTGGTCTGAACGACTGGGATGATGATGAGATCCTAGCATCGGTGCTGGCAGTGTC
CCAACAGGAATACCTAGACAGTATGAAGAAAAACAAAGTGCACAGAGACCCACCCCCAGA
CAAGAGTTGATGGAGACCCAGAGACTGGAGACCATCTCCCAACCCCCACCACTCTTGCCC
TCCAGTGCCACCCCACCTTCTTTGGCTTTCTTCCCTCTTGCCTATTCCTTCTTCCCTCTC
TCCCCTCCTCTCGCTCCTCCCCACTTCCCTCTGGCTGGCCCACCCCCACGCGCCCTCTCA
TCGCTGCCACCACCATCATCACCCGTCTCCTCGCCAGCTGATGTGCCCTGTTGCCCCCTG
CACAGCACCATCCCTGCATTCCACAGGGGACTCGGGCAAGGGTGCTGAAGGTAGGCGAGA
GGCACAGAGACAAACCAACTGGCAGCCAGGCAGCCCCTGAAGAGAGACATTCAGACAGAG
GAAAGTCTCCCTGTCCCCCATTCCTTCCAAGATCAGAAACTTATCACCCCACCTCCACAA
TGATGCCAGGGAGGTGGGAGGAAGAAGTGGGAAATACCCTTCCCAGTACCCCCAAGAATG
TCTGAGCCTTCAATGTTGAATTTTTTTCTTTATTAAAATGTACTTTTATCTTATAAAATC
AACCAATCAAAAAGTGATGTAGACAACAGCATTGGCTCTGTGAAGGTGGCATCTCTCTGG
TTTGGGGGCAGGCAGGCCACGGGGCACAAAGATGTGGTTGCTGCCCCTGGCCTCCAGCTC
TGTGGAGGTGGGCAGGGTCTAGAGTGTGAGTCAGACTGAGGTAGGAGGGCAGGGGGAGCA
GGTGTCAAGTGGGCTTTGGACAATGAGACTCTGACCTCGCTGCATTCCTTACGCTTCCAC
CTCCACCACCCGTCTTTGGAATCTCGGGGTGGGGTACCTTTGAGGATCATGGCCGCCACC
CAGGATTTGAGTGTGGGGAGTGGGAGCAGCATCGGCAGATGGGGCACCCATGCCCTGCAG
GTGTCAACAAGATCCGCCATCTGTAATGTCCTTGGCACAATAAAACCAAATGTCAGTTTC
AAAAAAAAAAAACTGTTCTGTGTGGGGCAGGGGGTGGGTGGGCCTCTGGTCAGAGGCAGC
GATGGCACAGGCCTTGGCTTGACCTCTGAAGGGCCACATGCTCTCCAGTGGGGTCTCTCT
GGGGGCCCAGAGTTCATATTTGATTCACAGTTTACTAAACCACCTTTTGGACCTGTTATC
ACCTGTCTTGGCCAACTGCCCAAGCCTCAGTATCGGCCCAGGCTATAGCCTGCCCAGCCC
ATTTCCTGGGGTGTGATGGGAGCCTCGAACTGAGAGCTCGATGGCAGGAGCCGAACTTCC
AGTGTCTCTGCCTGCCTCTCACCCCAGCATGTTTGCTCTTGTGATTGTTTGATGAGGAAG
TGCTTTGGACAGGCACGACGGTCACTGCATATCAACGTGAGTTTAGTGGAAGTGACCAGA
GGGGACTCCCGACCCCCCACCAGGTTTTAGAAACTGGGGGACAGCTAAACCTTTTTTTCG
TGTTCCCCAGTTCTCTTGACACTTTCCTTCCCTGCCCTTCCTAGAGGTAAAGCCAAGGTG
AGAAGGATGGCTGGCCCTCGGGTTTTGTCAGTTGTCTTTTTGATGTCCTTCCAGAATGCC
CCTGTGGAAGAATGTGTGTCCAGCTCTGCGGGTGAGGGTGTGGCTGTCCGCAGGGTGTCC
CTGTGGAAGCCACTGGTCAAGCACATGTGTTGGAGAGTTGGTTTGAAACCTTATCAGCTT
TTTCTGTGTGGCCTTGGTCAAATCACAGGCTCTCTGAGTTTCCAGTGTCGTGTGTGTAGG
ATGGGGGTGATTAATGTCTACTACCTCACACTCTGGGTGTGAGCATCGAGAGTGCATATG
GTCAACATAATGTTTGGTGGCACGGTGCCTGGCACATTCTGAGAGTTCAAATGTTAGCAG
GTGTTCTTATTTATTATCCTAATGTTGACGTTTCTGTACCATTTGGCCCCTGCCTACTTC
ATCTTGCTTCTCTGTCCAGTTTCCTTGGCCTCTGCCTGGAATTTGCCCTTCCCCTGTCCC
AAGCCTCCAACCTTGTCTCTCAAGATGGGTAGAGGGGTCTCCTTCTGAGAAGCCCTGTGT
GACCCCATCTACATTCTCATTTCTATCTACAAATATGTCTACTCCTTCCCCAGTAAACTG
TACTATCAACTTCCTGGGCAAGGGCTGTGATGCCTGGCTTATCTGTGTATCTCTTAATTA
TCTGCACCCCTTCTAGGGCCTCGCAGGCTTACAGTAGACCCCTAATAAATGTTGGATGAA
TAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGGCCTGCCATCATTCAAACCGGGGTTTGCAGAGCAGTCCCTGATGAAGAATGCCAT
AAAGACGTCGGAGGAGTCCTGGATTGAACAGCAGATGCTGGAAGACAAGAAGCGGGCCAC
AGACTGGGAGGCCACAAACGAGGCCATTGAGGAGCAGGTGGCTCGGGAGTCCTACCTGCA
GTGGCTACGGGATCAAGAGAAACAGGCCCGCCAAGTCCGTGGCCCCAGCCAGCCCCGGAA
AGCCAGCGCCACATGCAGTTCTGCCACAGCAGCAGCCTCCAGTGGTCTGGAGGAGTGGAC
CAGCCGGTCCCCGCGGCAGCGGAGTTCAGCCTCGTCACCCGAGCACCCTGAGCTACATGC
TGAGCTGGGCATCAAGCCCCCTTCCCCAGGCACTGTCTTAGCTCTTGCCAAACCTCCTTC
GCCCTGTGCACCAGGTACAAGCAGCCAGTTCTCGACAGGGGCCGACCGGGCTACTTCCCC
CCTCGTGTCCCTCTACCCTGCTCTGGAATGCCGGGCCCTCATTCAGCAGATGTCCCCCTC
TGCCTTTGGTCTGAACGACTGGGATGATGATGAGATCCTAGCATCGGTGCTGGCAGTGTC
CCAACAGGAATACCTAGACAGTATGAAGAAAAACAAAGTGCACAGAGACCCACCCCCAGA
CAAGAGTTGATGGAGACCCAGAGACTGGAGACCATCTCCCAACCCCCACCACTCTTGCCC
TCCAGTGCCACCCCACCTTCTTTGGCTTTCTTCCCTCTTGCCTATTCCTTCTTCCCTCTC
TCCCCTCCTCTCGCTCCTCCCCACTTCCCTCTGGCTGGCCCACCCCCACGCGCCCTCTCA
TCGCTGCCACCACCATCATCACCCGTCTCCTCGCCAGCTGATGTGCCCTGTTGCCCCCTG
CACAGCACCATCCCTGCATTCCACAGGGGACTCGGGCAAGGGTGCTGAAGGTAGGCGAGA
GGCACAGAGACAAACCAACTGGCAGCCAGGCAGCCCCTGAAGAGAGACATTCAGACAGAG
GAAAGTCTCCCTGTCCCCCATTCCTTCCAAGATCAGAAACTTATCACCCCACCTCCACAA
TGATGCCAGGGAGGTGGGAGGAAGAAGTGGGAAATACCCTTCCCAGTACCCCCAAGAATG
TCTGAGCCTTCAATGTTGAATTTTTTTCTTTATTAAAATGTACTTTTATCTTATAAAATC
AACCAATCAAAAAGTGATGTAGACAACAGCATTGGCTCTGTGAAGGTGGCATCTCTCTGG
TTTGGGGGCAGGCAGGCCACGGGGCACAAAGATGTGGTTGCTGCCCCTGGCCTCCAGCTC
TGTGGAGGTGGGCAGGGTCTAGAGTGTGAGTCAGACTGAGGTAGGAGGGCAGGGGGAGCA
GGTGTCAAGTGGGCTTTGGACAATGAGACTCTGACCTCGCTGCATTCCTTACGCTTCCAC
CTCCACCACCCGTCTTTGGAATCTCGGGGTGGGGTACCTTTGAGGATCATGGCCGCCACC
CAGGATTTGAGTGTGGGGAGTGGGAGCAGCATCGGCAGATGGGGCACCCATGCCCTGCAG
GTGTCAACAAGATCCGCCATCTGTAATGTCCTTGGCACAATAAAACCAAATGTCAGTTTC
AAAAAAAAAAAACTGTTCTGTGTGGGGCAGGGGGTGGGTGGGCCTCTGGTCAGAGGCAGC
GATGGCACAGGCCTTGGCTTGACCTCTGAAGGGCCACATGCTCTCCAGTGGGGTCTCTCT
GGGGGCCCAGAGTTCATATTTGATTCACAGTTTACTAAACCACCTTTTGGACCTGTTATC
ACCTGTCTTGGCCAACTGCCCAAGCCTCAGTATCGGCCCAGGCTATAGCCTGCCCAGCCC
ATTTCCTGGGGTGTGATGGGAGCCTCGAACTGAGAGCTCGATGGCAGGAGCCGAACTTCC
AGTGTCTCTGCCTGCCTCTCACCCCAGCATGTTTGCTCTTGTGATTGTTTGATGAGGAAG
TGCTTTGGACAGGCACGACGGTCACTGCATATCAACGTGAGTTTAGTGGAAGTGACCAGA
GGGGACTCCCGACCCCCCACCAGGTTTTAGAAACTGGGGGACAGCTAAACCTTTTTTTCG
TGTTCCCCAGTTCTCTTGACACTTTCCTTCCCTGCCCTTCCTAGAGGTAAAGCCAAGGTG
AGAAGGATGGCTGGCCCTCGGGTTTTGTCAGTTGTCTTTTTGATGTCCTTCCAGAATGCC
CCTGTGGAAGAATGTGTGTCCAGCTCTGCGGGTGAGGGTGTGGCTGTCCGCAGGGTGTCC
CTGTGGAAGCCACTGGTCAAGCACATGTGTTGGAGAGTTGGTTTGAAACCTTATCAGCTT
TTTCTGTGTGGCCTTGGTCAAATCACAGGCTCTCTGAGTTTCCAGTGTCGTGTGTGTAGG
ATGGGGGTGATTAATGTCTACTACCTCACACTCTGGGTGTGAGCATCGAGAGTGCATATG
GTCAACATAATGTTTGGTGGCACGGTGCCTGGCACATTCTGAGAGTTCAAATGTTAGCAG
GTGTTCTTATTTATTATCCTAATGTTGACGTTTCTGTACCATTTGGCCCCTGCCTACTTC
ATCTTGCTTCTCTGTCCAGTTTCCTTGGCCTCTGCCTGGAATTTGCCCTTCCCCTGTCCC
AAGCCTCCAACCTTGTCTCTCAAGATGGGTAGAGGGGTCTCCTTCTGAGAAGCCCTGTGT
GACCCCATCTACATTCTCATTTCTATCTACAAATATGTCTACTCCTTCCCCAGTAAACTG
TACTATCAACTTCCTGGGCAAGGGCTGTGATGCCTGGCTTATCTGTGTATCTCTTAATTA
TCTGCACCCCTTCTAGGGCCTCGCAGGCTTACAGTAGACCCCTAATAAATGTTGGATGAA
TAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9CV50_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CV50_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               988-1103, - strand, RNAz p=0.545766

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               988-1103, - strand, RNAz p=0.545766

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               230-436, gnl|bosTau2|chrX (26197591-26197797)
               

               
               230-436, gnl|Hg17|chrX (48537580-48537374)
               

               
               230-436, gnl|Mm7|chrX (6306701-6306907)
               


               
               800-1214, gnl|bosTau2|chr27 (11286507-11286123)
               

               
               800-1214, gnl|Hg17|chrX (48536569-48536144)
               

               
               800-1214, gnl|Mm7|chrX (6307629-6308026)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               230-436, gnl|bosTau2|chrX (26197591-26197797)
               

               
               230-436, gnl|Hg17|chrX (48537580-48537374)
               

               
               230-436, gnl|Mm7|chrX (6306701-6306907)
               


               
               800-1214, gnl|bosTau2|chr27 (11286507-11286123)
               

               
               800-1214, gnl|Hg17|chrX (48536569-48536144)
               

               
               800-1214, gnl|Mm7|chrX (6307629-6308026)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               fcc (0.39557)
               

               
               cty (0.31224)
               

               
               pla (0.267344)
               

               
               cly (0.241284)
               

               
               pgl (0.236967)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               med (0.116252)
               

               
               cbl (0.114797)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               cty (0.31224)
               

               
               pla (0.267344)
               

               
               cly (0.241284)
               

               
               pgl (0.236967)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               med (0.116252)
               

               
               cbl (0.114797)

	230-436, gnl\|bosTau2\|chrX (26197591-26197797)
	230-436, gnl\|Hg17\|chrX (48537580-48537374)
	230-436, gnl\|Mm7\|chrX (6306701-6306907)

	800-1214, gnl\|bosTau2\|chr27 (11286507-11286123)
	800-1214, gnl\|Hg17\|chrX (48536569-48536144)
	800-1214, gnl\|Mm7\|chrX (6307629-6308026)

	fcc (0.39557)
	cty (0.31224)
	pla (0.267344)
	cly (0.241284)
	pgl (0.236967)
	mas (0.210305)
	nbm (0.198649)
	ill (0.175593)
	fbs (0.175346)
	nco (0.161734)
	fat (0.147427)
	pty (0.142714)
	ute (0.132784)
	med (0.116252)
	cbl (0.114797)