Non-Coding RNA Search

Ss1.1-Pig4-TMW8035H12.3

Sequence:


               
               AATCCTGATGAACCTCCAGCTGCTGAACAGCCTAAACCATTGTATCCATATAAAACAGTT
GGCTGTGTTTTCAATCATCAGATGTTCCTAGGAAATTGTCAGCCCTCTGACTCAGTAGAA
AGCTGTGTATTTGATTTGAATGATGAGTCCAAGTGGAAACCCATGAGTGAAGAAGCAATT
AAATCCGTGTGTGCTCCGGGGGCTACAACGTCCCTTCCCCCCTTCCCCCCGCTATGCGCT
TCCACGATCGATGCTTCTGTAACAAGCAATGAAATTGAAATGCAACTGAGGCTACTTGTA
TCAGAACACAGGAAGGATCTTGGCCTCACTACTGTGTGGGAAGACCAGCTTTCCTATCTC
TTATCACCAGCTCTGGCTGCTTATGAATTTGAGCGTACAACAAGTATATCTGCAGGCAAC
GAGGAGTTTCAAGATGCCATAAGGAGGGCTGTGCCTGATGGGCACACGTTTAAAGGGTTC
CCAATACACTTTGTGTATAGAAATGCAAGGCGTGCGTTTGCCACATGTCTTCGGTCTCCT
TTCTGTGAAGAAATAATCTGTTGCCGTGGAGACCAGGTGCGACTGGCAGTTCGTGTCCGA
GTGTTTACTTACCCTGAATCTGCATGTGCTGTTTGGATCATGTTTGCTTGTAAATATCGA
TCTGTACTATAGGAGTAACATTTATATTCTGTAAGAATATACCTGGGAGTTCTTTTGTGG
CTCAGCGGGTTAAGAAACCAGCGTTGTCACTGCAGTGGCCCAGGTCACTACTATGGCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCCTGATGAACCTCCAGCTGCTGAACAGCCTAAACCATTGTATCCATATAAAACAGTT
GGCTGTGTTTTCAATCATCAGATGTTCCTAGGAAATTGTCAGCCCTCTGACTCAGTAGAA
AGCTGTGTATTTGATTTGAATGATGAGTCCAAGTGGAAACCCATGAGTGAAGAAGCAATT
AAATCCGTGTGTGCTCCGGGGGCTACAACGTCCCTTCCCCCCTTCCCCCCGCTATGCGCT
TCCACGATCGATGCTTCTGTAACAAGCAATGAAATTGAAATGCAACTGAGGCTACTTGTA
TCAGAACACAGGAAGGATCTTGGCCTCACTACTGTGTGGGAAGACCAGCTTTCCTATCTC
TTATCACCAGCTCTGGCTGCTTATGAATTTGAGCGTACAACAAGTATATCTGCAGGCAAC
GAGGAGTTTCAAGATGCCATAAGGAGGGCTGTGCCTGATGGGCACACGTTTAAAGGGTTC
CCAATACACTTTGTGTATAGAAATGCAAGGCGTGCGTTTGCCACATGTCTTCGGTCTCCT
TTCTGTGAAGAAATAATCTGTTGCCGTGGAGACCAGGTGCGACTGGCAGTTCGTGTCCGA
GTGTTTACTTACCCTGAATCTGCATGTGCTGTTTGGATCATGTTTGCTTGTAAATATCGA
TCTGTACTATAGGAGTAACATTTATATTCTGTAAGAATATACCTGGGAGTTCTTTTGTGG
CTCAGCGGGTTAAGAAACCAGCGTTGTCACTGCAGTGGCCCAGGTCACTACTATGGCACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55647667|ref|XP_512198.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55647667|ref|XP_512198.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-316, gnl|bosTau2|chr24 (31091328-31091013)
               

               
               1-316, gnl|Hg17|chr18 (12668422-12668107)
               

               
               1-316, gnl|Mm7|chr18 (68015746-68015431)
               


               
               528-714, gnl|bosTau2|chr24 (31088606-31088426)
               

               
               528-714, gnl|Hg17|chr18 (12663511-12663326)
               

               
               528-714, gnl|Mm7|chr18 (68011673-68011492)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-316, gnl|bosTau2|chr24 (31091328-31091013)
               

               
               1-316, gnl|Hg17|chr18 (12668422-12668107)
               

               
               1-316, gnl|Mm7|chr18 (68015746-68015431)
               


               
               528-714, gnl|bosTau2|chr24 (31088606-31088426)
               

               
               528-714, gnl|Hg17|chr18 (12663511-12663326)
               

               
               528-714, gnl|Mm7|chr18 (68011673-68011492)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fce (0.271592)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               pgl (0.118483)

	1-316, gnl\|bosTau2\|chr24 (31091328-31091013)
	1-316, gnl\|Hg17\|chr18 (12668422-12668107)
	1-316, gnl\|Mm7\|chr18 (68015746-68015431)

	528-714, gnl\|bosTau2\|chr24 (31088606-31088426)
	528-714, gnl\|Hg17\|chr18 (12663511-12663326)
	528-714, gnl\|Mm7\|chr18 (68011673-68011492)