Non-Coding RNA Search

Ss1.1-Pig4-TMW8035H21.5

Sequence:


               
               GAGGCGTGCTGTCACCCATCCTCACACGACTGATGAACTTCTTCGTGTTCTCTCGGGGTC
TCACCCCAGTCTTTGGGCCGTACACCCGACCCTCTGAGAGTGAGCTGTGGGACATGTGGG
CAGGAATACGCAACAATGACGGGAACTTGGTCATCGACAGTCTCTTGCAGTACATCAACC
AGAGGAAGAAGTTTAGAAGACGCTGGGTGGGAGCTCTGGCCTCTGTATCTATTCCCATTC
ATTTTATCTATGGGCCCTTGGATCCAGTGAATCCCTACCCAGAGTTTTTGGAGCTGTACA
GGAAAACGCTGCCGCGGTCCACAGTGTCGATTCTGGATGACCACATTAGCCACTATCCAC
AGCTAGAGGATCCCATGGGCTTCTTGAATGCATATATGGGCTTCATCAACTCCTTCTGAG
CTGGAAAGAGTAGCCTCCCTGTATTACTGCCCCTGTTCCCTTATCTATTGTGTATTCCAC
TTAGGAAGACATGCCCAAAAGAGGTCCTGGCCACCGAACACTCTCTCTCACAAAAGTCCA
CCTGACTCACGCTGGTGAACAGCATATAGTAAAAAGCCAGCATAAGCTCTAAGGGGGACC
TGACAGTCCACCTCCCATTCCTTTGACATTTGCTCAAGTGGCTGGACTTGCGGTAGCCTT
GGTGTTGTTAGGAAATTCTGATGAGCGCTCCTATTCACTGATGCAGAAAGACATTTTTGC
ATAGTCTTTGAAACGCTTCTCTGGACTTTTGTGAAATATTTAGAAATGCTAATTTCTGTC
CCAACCCTGACTGGAGTCACCTATGGCAAAGAAGGAGGAGGTGCCGCCCTCACCCCTCCT
TGAGGGGCTGTAAGTTCTCTAAGTGACACACAGCTTCAAGTGAGAGTGATTCTCCCTTGT
CGTAACTTTGGATTTAGTTTCATTAGCTGCTTCTAACTGTAGACATTTTGTTAGATTTTG
GTTTTAATAATGCAGTATTTTAAGTATACGTTAAGACTGTGCTTTACCTACATGTATGAT
ATATGTGTATTTTATAAGGATACTAAACCGGCAGACACTTACTCTGGTAGAATAGTTTAA
CCTTATTAAACATTTTTCATTTCTGAATAAACTGAACTAAATCCAAACTAATTACAGAAT
TTCCTAAAAATCACAGGCCATTAAGGACAGGAGCATTCGTGCCAGAGATTTACTGTTATT
TGCTGTTAGAAGCGATCTTTGCAGCTAATAACAGTCGCACTCTTCATACCTCGGTGCTTA
GAAGCATGTCCCTCCTGAGCTCAAGCCGAGAGGAGGGATCGCTGTACAGTCCACGTTCCC
AGGCCGAATGTACACTGATGGCTTAACTTCTTGTTGGTTGTCCCAGAGAGGGTTCCTCAT
GTAGCTCAGCAATTCCTGTACTTTACAGACAGGAAAGTTCCAGAAACCCTGAGAACAAAG
TCTGAAAGGCCTAGGAGCAAATGGTGCTGAATACTTTTTTTTTAAGCTACAGTTTCATTG
TCTCAGTTAAAACAAGAGTATTAAGTGGTAATTTTAAATTCTTTTTTTTTTTATTAGCAA
CTTCAAGTATAACAACGGAAACTGGAATAAGTGTTTATTTTCTATGAATAAAAACGAATT
TTGACAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCGTGCTGTCACCCATCCTCACACGACTGATGAACTTCTTCGTGTTCTCTCGGGGTC
TCACCCCAGTCTTTGGGCCGTACACCCGACCCTCTGAGAGTGAGCTGTGGGACATGTGGG
CAGGAATACGCAACAATGACGGGAACTTGGTCATCGACAGTCTCTTGCAGTACATCAACC
AGAGGAAGAAGTTTAGAAGACGCTGGGTGGGAGCTCTGGCCTCTGTATCTATTCCCATTC
ATTTTATCTATGGGCCCTTGGATCCAGTGAATCCCTACCCAGAGTTTTTGGAGCTGTACA
GGAAAACGCTGCCGCGGTCCACAGTGTCGATTCTGGATGACCACATTAGCCACTATCCAC
AGCTAGAGGATCCCATGGGCTTCTTGAATGCATATATGGGCTTCATCAACTCCTTCTGAG
CTGGAAAGAGTAGCCTCCCTGTATTACTGCCCCTGTTCCCTTATCTATTGTGTATTCCAC
TTAGGAAGACATGCCCAAAAGAGGTCCTGGCCACCGAACACTCTCTCTCACAAAAGTCCA
CCTGACTCACGCTGGTGAACAGCATATAGTAAAAAGCCAGCATAAGCTCTAAGGGGGACC
TGACAGTCCACCTCCCATTCCTTTGACATTTGCTCAAGTGGCTGGACTTGCGGTAGCCTT
GGTGTTGTTAGGAAATTCTGATGAGCGCTCCTATTCACTGATGCAGAAAGACATTTTTGC
ATAGTCTTTGAAACGCTTCTCTGGACTTTTGTGAAATATTTAGAAATGCTAATTTCTGTC
CCAACCCTGACTGGAGTCACCTATGGCAAAGAAGGAGGAGGTGCCGCCCTCACCCCTCCT
TGAGGGGCTGTAAGTTCTCTAAGTGACACACAGCTTCAAGTGAGAGTGATTCTCCCTTGT
CGTAACTTTGGATTTAGTTTCATTAGCTGCTTCTAACTGTAGACATTTTGTTAGATTTTG
GTTTTAATAATGCAGTATTTTAAGTATACGTTAAGACTGTGCTTTACCTACATGTATGAT
ATATGTGTATTTTATAAGGATACTAAACCGGCAGACACTTACTCTGGTAGAATAGTTTAA
CCTTATTAAACATTTTTCATTTCTGAATAAACTGAACTAAATCCAAACTAATTACAGAAT
TTCCTAAAAATCACAGGCCATTAAGGACAGGAGCATTCGTGCCAGAGATTTACTGTTATT
TGCTGTTAGAAGCGATCTTTGCAGCTAATAACAGTCGCACTCTTCATACCTCGGTGCTTA
GAAGCATGTCCCTCCTGAGCTCAAGCCGAGAGGAGGGATCGCTGTACAGTCCACGTTCCC
AGGCCGAATGTACACTGATGGCTTAACTTCTTGTTGGTTGTCCCAGAGAGGGTTCCTCAT
GTAGCTCAGCAATTCCTGTACTTTACAGACAGGAAAGTTCCAGAAACCCTGAGAACAAAG
TCTGAAAGGCCTAGGAGCAAATGGTGCTGAATACTTTTTTTTTAAGCTACAGTTTCATTG
TCTCAGTTAAAACAAGAGTATTAAGTGGTAATTTTAAATTCTTTTTTTTTTTATTAGCAA
CTTCAAGTATAACAACGGAAACTGGAATAAGTGTTTATTTTCTATGAATAAAAACGAATT
TTGACAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61825773|ref|XP_591933.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61825773|ref|XP_591933.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-740, gnl|bosTau2|chr20 (7294344-7293613)
               

               
               1-740, gnl|Hg17|chr3 (29104454-29105208)
               

               
               1-740, gnl|Mm7|chr6 (30677021-30679677)
               


               
               1455-1578, gnl|bosTau2|chr11 (30015724-30015837)
               

               
               1455-1578, gnl|Hg17|chr7 (129739909-129740028)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-740, gnl|bosTau2|chr20 (7294344-7293613)
               

               
               1-740, gnl|Hg17|chr3 (29104454-29105208)
               

               
               1-740, gnl|Mm7|chr6 (30677021-30679677)
               


               
               1455-1578, gnl|bosTau2|chr11 (30015724-30015837)
               

               
               1455-1578, gnl|Hg17|chr7 (129739909-129740028)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               amn (0.835422)
               

               
               cte (0.29274)
               

               
               ute (0.265569)
               

               
               ova (0.258264)
               

               
               nms (0.213858)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.835422)
               

               
               cte (0.29274)
               

               
               ute (0.265569)
               

               
               ova (0.258264)
               

               
               nms (0.213858)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)

	1-740, gnl\|bosTau2\|chr20 (7294344-7293613)
	1-740, gnl\|Hg17\|chr3 (29104454-29105208)
	1-740, gnl\|Mm7\|chr6 (30677021-30679677)

	1455-1578, gnl\|bosTau2\|chr11 (30015724-30015837)
	1455-1578, gnl\|Hg17\|chr7 (129739909-129740028)

	amn (0.835422)
	cte (0.29274)
	ute (0.265569)
	ova (0.258264)
	nms (0.213858)
	liv (0.146284)
	hyp (0.142837)
	pla (0.133672)
	ecc (0.115035)