Non-Coding RNA Search

Ss1.1-Pig4-TMW8035I04.3

Sequence:


               
               GCCCTGCAGGCCTGGGCATTGCTACTTACCATCTGCCCCAGCACCCACATCAGTCACATC
TTGGACAGGCAGCTGCCCCAGCTGCCCCAGCTCTTATCCAGTGAAAGCGTGAACCTGCGG
ATTGCTGCTGGAGAGACCATCGCACTGCTCTTTGAACTGGCCCGGGACCTTGAGGAGGAC
TTCATTTATGAGGACATGGAGGCCCTCTGCGGTGCGCTGCGCACTCTGGCCACCGATAGC
AACAAGTATCGTGCCAAGGCTGACCGCCGGCGCCAGCGCTCGACCTTCCGCTCTGTGCTG
CACTTTGTTGAGGGCGGCGAGTGTGAGGAAGAGACAGTCCGCTTTGGGCTCGAGGTGCTC
TATGTGGACAGCTGGGCTCGGCGCCGGATCTACGCTGCCTTCAAGGATGTGCTGGGTTCT
GGCATGCACCACCACCTCCAGAACAATGAGCTACTCCGTGACATCTTTGGCCTGGGCCCT
GTGCTGGTACTGGATGCCACTGCCCTGAAGGCCTGCAAAATCTCACGTTTTGAGAAGCAC
CTGTACAACGCTGCTTCCTTCAAAGCCAGGACCAAGGCTCGCAGCCGTGTGCGGGACAAG
CGGGCAGACATCCTGTGAGGCAGGACCAGCTGAAGTGGAGACTGTCCACGTCCTTGCCTA
TACTTTTAACAGAAGACAGTGCAATACCTGGTACTTGCCAGGAATTGTCACTTTATTTTT
TTAATGACAAAACCAAAAACAGAGATGAGTATGGGTGGCTAGAGGCCAGGCCGTTTGGGA
CCCTGGCACTTTGCCCCTGCACTCAGCCCTGTGGCTTCTTCCTGCCCTGTCTCAGGCCAG
GCCAGCTGTGAGCCTGTCACAGGGCTGTGGGGCAGGCAGAAGAGGGCTGTGCCTTCCTTT
CTCAGGTCTTGCTCCCCTGGGCTGAACCACTTCCAGGGGGTGGGATCTGGACACATGCCA
CTACAACAGGTGGGGAAGTGAGACTACCTGGAATGGATTTATGTGCTGATTTTTAAAGGG
TATTAGAGATAATTAAACAGTGCTCAGCCTTCTGTGGCCCTGGCTTCTGGCTGTTTGTGC
CTGACCTCCCTCTCTCTCTCCACTAACCCAGGCTTGACCCAGCTGGGCCTCCTTATCTCC
AGCTCCCCTTTGCCCTCCAAGATAGTCTCTCCCCAGTGGCCTTCCTCCCCCTGCTCAGAG
CCCAGCCTGTTTTCTGAGAGCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCTGCAGGCCTGGGCATTGCTACTTACCATCTGCCCCAGCACCCACATCAGTCACATC
TTGGACAGGCAGCTGCCCCAGCTGCCCCAGCTCTTATCCAGTGAAAGCGTGAACCTGCGG
ATTGCTGCTGGAGAGACCATCGCACTGCTCTTTGAACTGGCCCGGGACCTTGAGGAGGAC
TTCATTTATGAGGACATGGAGGCCCTCTGCGGTGCGCTGCGCACTCTGGCCACCGATAGC
AACAAGTATCGTGCCAAGGCTGACCGCCGGCGCCAGCGCTCGACCTTCCGCTCTGTGCTG
CACTTTGTTGAGGGCGGCGAGTGTGAGGAAGAGACAGTCCGCTTTGGGCTCGAGGTGCTC
TATGTGGACAGCTGGGCTCGGCGCCGGATCTACGCTGCCTTCAAGGATGTGCTGGGTTCT
GGCATGCACCACCACCTCCAGAACAATGAGCTACTCCGTGACATCTTTGGCCTGGGCCCT
GTGCTGGTACTGGATGCCACTGCCCTGAAGGCCTGCAAAATCTCACGTTTTGAGAAGCAC
CTGTACAACGCTGCTTCCTTCAAAGCCAGGACCAAGGCTCGCAGCCGTGTGCGGGACAAG
CGGGCAGACATCCTGTGAGGCAGGACCAGCTGAAGTGGAGACTGTCCACGTCCTTGCCTA
TACTTTTAACAGAAGACAGTGCAATACCTGGTACTTGCCAGGAATTGTCACTTTATTTTT
TTAATGACAAAACCAAAAACAGAGATGAGTATGGGTGGCTAGAGGCCAGGCCGTTTGGGA
CCCTGGCACTTTGCCCCTGCACTCAGCCCTGTGGCTTCTTCCTGCCCTGTCTCAGGCCAG
GCCAGCTGTGAGCCTGTCACAGGGCTGTGGGGCAGGCAGAAGAGGGCTGTGCCTTCCTTT
CTCAGGTCTTGCTCCCCTGGGCTGAACCACTTCCAGGGGGTGGGATCTGGACACATGCCA
CTACAACAGGTGGGGAAGTGAGACTACCTGGAATGGATTTATGTGCTGATTTTTAAAGGG
TATTAGAGATAATTAAACAGTGCTCAGCCTTCTGTGGCCCTGGCTTCTGGCTGTTTGTGC
CTGACCTCCCTCTCTCTCTCCACTAACCCAGGCTTGACCCAGCTGGGCCTCCTTATCTCC
AGCTCCCCTTTGCCCTCCAAGATAGTCTCTCCCCAGTGGCCTTCCTCCCCCTGCTCAGAG
CCCAGCCTGTTTTCTGAGAGCTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12832880|dbj|BAB22296.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12832880|dbj|BAB22296.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               213-332, - strand, RNAz p=0.911781
               

               
               615-730, - strand, RNAz p=0.71918

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               213-332, - strand, RNAz p=0.911781
               

               
               615-730, - strand, RNAz p=0.71918

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               173-349, gnl|bosTau2|chr22 (38533286-38533111)
               


               
               536-768, gnl|bosTau2|chr22 (38532893-38532675)
               

               
               536-768, gnl|Hg17|chr3 (50300708-50300470)
               

               
               536-768, gnl|Mm7|chr9 (107321921-107322155)
               


               
               853-1224, gnl|bosTau2|chr22 (38532642-38532283)
               

               
               853-1224, gnl|Hg17|chr3 (50300421-50300015)
               

               
               853-1224, gnl|Mm7|chr9 (107322209-107322630)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               173-349, gnl|bosTau2|chr22 (38533286-38533111)
               


               
               536-768, gnl|bosTau2|chr22 (38532893-38532675)
               

               
               536-768, gnl|Hg17|chr3 (50300708-50300470)
               

               
               536-768, gnl|Mm7|chr9 (107321921-107322155)
               


               
               853-1224, gnl|bosTau2|chr22 (38532642-38532283)
               

               
               853-1224, gnl|Hg17|chr3 (50300421-50300015)
               

               
               853-1224, gnl|Mm7|chr9 (107322209-107322630)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               ece (0.45861)
               

               
               ill (0.351185)
               

               
               fce (0.271592)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               ill (0.351185)
               

               
               fce (0.271592)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

	213-332, - strand, RNAz p=0.911781
	615-730, - strand, RNAz p=0.71918

	173-349, gnl\|bosTau2\|chr22 (38533286-38533111)

	536-768, gnl\|bosTau2\|chr22 (38532893-38532675)
	536-768, gnl\|Hg17\|chr3 (50300708-50300470)
	536-768, gnl\|Mm7\|chr9 (107321921-107322155)

	853-1224, gnl\|bosTau2\|chr22 (38532642-38532283)
	853-1224, gnl\|Hg17\|chr3 (50300421-50300015)
	853-1224, gnl\|Mm7\|chr9 (107322209-107322630)

	ece (0.45861)
	ill (0.351185)
	fce (0.271592)
	pty (0.142714)
	nca (0.136874)
	cov (0.132153)
	clu (0.119646)
	med (0.116252)
	nbm (0.0993246)