Non-Coding RNA Search

Ss1.1-Pig4-TMW8035I20.3

Sequence:


               
               ACTTTTTAATGCATTGGGATTAATTATTGGTAATAATAGGGCTGATGGCAGTTTACTCAA
TCACTGGTTATAATTTGGGACAAAAACTGCTACATTGACCTTCATCTCGCCCAGAGTGCT
CACGGCTGGTGTGATCAGTGGATCAGGAATGCAATTGTGTCGATTGTGAATTCCTACCCA
TTGCCTCCCTCGGTGAATATGGAAATGGCCACCTGGGTTTTTCCATTGCAGGAAGGGCTT
TGGGATGCACCTATATTGGCTAATCGAGGATGTGAACATTCCATTCATTAGTCTGATCAA
GCTATTGATTAATTTTTAGACTCTAGATCAAAATGTGAAACATTTTATGTTCAATCCATA
TTTGTCTTGCACATTATAAATATATTTTTATTTTTTAGTAATTTTGGGGAGGGGGGAGAG
AGGGGTAATAATGCCCTTAACATAATTCACAAAAGCAGCTGTGACGACCTCCAATCAGTT
TACTTCATTTCAAAACTATTTCCAATCACAGGAAAGATTTATTTAAGATACACTTTTACA
TTTCACCTGTGGATGTCTGTGACTTCATCCTCAGTATGTTCCCAAATCTGTGCTGGCATT
GAATGGACAAAACATTGTACTGGTGGGTTTTTCTACTAATTATTTTTTGAAGCGTTATTT
TCCCAACACAAAAGAGCTTTTTTTCTCAGTATAACAAAAATTGAAATCCTATGTGTATTG
AATAGTAAATAGACAAATTTTATTTTTTATTTCCACTTGAAGAGTTACATTTCGTATAAA
AGTTTACAAATAACGGTTTTTATTTTGATTTTTTCAGTATAAAAAATTGCCTTGATGGCA
TATTATGATGTAATGCTAATTGCTAGTAGGATAGTTAAATGTCAGTATTGAAACCTAATC
TTTAGCTGCCGTCTTGTAGATACAAACGAATGTTCACCAAGCATGTATTTTGTATTTTGT
TGCATTGTACACTGCAACTAATAAGCCAAGGAATCAACATATATTAGGTGCGTGTACTGT
TTCTAAAAACCACAAACTAAGAATGATAAATTATCAATATAGTTTAGTATTTGCTAATTT
TACTACACTCTTTTGTTATGTATATGTAGGGAAGTCATAGGGATTATAAATTCAATTTGA
GTAAAGTTTAAAACCATATATTTTATGATAAAGGGCCTTTAACTTAAGATGGCCAAAGCA
CTGATATTATATATTTGCTGTAAAGAGAATTATAAGAGTTTTATTTTTCTGATATTAAAA
GTTACTTAATAAAGACTTGTTTCCATTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTTTTAATGCATTGGGATTAATTATTGGTAATAATAGGGCTGATGGCAGTTTACTCAA
TCACTGGTTATAATTTGGGACAAAAACTGCTACATTGACCTTCATCTCGCCCAGAGTGCT
CACGGCTGGTGTGATCAGTGGATCAGGAATGCAATTGTGTCGATTGTGAATTCCTACCCA
TTGCCTCCCTCGGTGAATATGGAAATGGCCACCTGGGTTTTTCCATTGCAGGAAGGGCTT
TGGGATGCACCTATATTGGCTAATCGAGGATGTGAACATTCCATTCATTAGTCTGATCAA
GCTATTGATTAATTTTTAGACTCTAGATCAAAATGTGAAACATTTTATGTTCAATCCATA
TTTGTCTTGCACATTATAAATATATTTTTATTTTTTAGTAATTTTGGGGAGGGGGGAGAG
AGGGGTAATAATGCCCTTAACATAATTCACAAAAGCAGCTGTGACGACCTCCAATCAGTT
TACTTCATTTCAAAACTATTTCCAATCACAGGAAAGATTTATTTAAGATACACTTTTACA
TTTCACCTGTGGATGTCTGTGACTTCATCCTCAGTATGTTCCCAAATCTGTGCTGGCATT
GAATGGACAAAACATTGTACTGGTGGGTTTTTCTACTAATTATTTTTTGAAGCGTTATTT
TCCCAACACAAAAGAGCTTTTTTTCTCAGTATAACAAAAATTGAAATCCTATGTGTATTG
AATAGTAAATAGACAAATTTTATTTTTTATTTCCACTTGAAGAGTTACATTTCGTATAAA
AGTTTACAAATAACGGTTTTTATTTTGATTTTTTCAGTATAAAAAATTGCCTTGATGGCA
TATTATGATGTAATGCTAATTGCTAGTAGGATAGTTAAATGTCAGTATTGAAACCTAATC
TTTAGCTGCCGTCTTGTAGATACAAACGAATGTTCACCAAGCATGTATTTTGTATTTTGT
TGCATTGTACACTGCAACTAATAAGCCAAGGAATCAACATATATTAGGTGCGTGTACTGT
TTCTAAAAACCACAAACTAAGAATGATAAATTATCAATATAGTTTAGTATTTGCTAATTT
TACTACACTCTTTTGTTATGTATATGTAGGGAAGTCATAGGGATTATAAATTCAATTTGA
GTAAAGTTTAAAACCATATATTTTATGATAAAGGGCCTTTAACTTAAGATGGCCAAAGCA
CTGATATTATATATTTGCTGTAAAGAGAATTATAAGAGTTTTATTTTTCTGATATTAAAA
GTTACTTAATAAAGACTTGTTTCCATTAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               893-1044, - strand, RNAz p=0.587215

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               893-1044, - strand, RNAz p=0.587215

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               618-1296, gnl|bosTau2|chr18 (5458428-5457747)
               

               
               618-1296, gnl|Hg17|chr18 (46955596-46954918)
               

               
               618-1296, gnl|Mm7|chr18 (73986233-73986911)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               618-1296, gnl|bosTau2|chr18 (5458428-5457747)
               

               
               618-1296, gnl|Hg17|chr18 (46955596-46954918)
               

               
               618-1296, gnl|Mm7|chr18 (73986233-73986911)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               fco (0.471624)
               

               
               kid (0.389206)
               

               
               eye (0.341006)
               

               
               mga (0.32041)
               

               
               bfe (0.299715)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               kid (0.389206)
               

               
               eye (0.341006)
               

               
               mga (0.32041)
               

               
               bfe (0.299715)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

	618-1296, gnl\|bosTau2\|chr18 (5458428-5457747)
	618-1296, gnl\|Hg17\|chr18 (46955596-46954918)
	618-1296, gnl\|Mm7\|chr18 (73986233-73986911)

	fco (0.471624)
	kid (0.389206)
	eye (0.341006)
	mga (0.32041)
	bfe (0.299715)
	tes (0.207814)
	sag (0.182715)
	sin (0.174948)
	isp (0.150376)
	fat (0.147427)
	liv (0.146284)
	pla (0.133672)
	ret (0.128733)
	pgl (0.118483)
	med (0.116252)