Ss1.1-Pig4-TMW8035J01.5
|
ATTGAAGAGTGAAGAGGAAAAAACTGAATTTTTCAAATTCCTGCTGGACAGAGTCAGCTG
CTTGTCAGAGGAATTAATTGCTTCACGGTTGGTGCCTCTTCTGCTTAATCAGTTGGTGTT
TGCAGAGCCAGTAGCTGTTAAGAGTTTTCTTCCTTATCTCCTTGGCCCCAAAAAAGACAA
TGCTCGGGGAGAAACCCCCTGCCTGCTCTCACCAGCCCTGTTCCAGTCTCGGGTGATCCC
TGTGCTGCTCCAGTTGTTCGAGGTGCATGAGGAGCACGTGCGGATGGTGCTGCTGTCCCA
CCTGGAGGCCTATGTGGAGCATTTCACTCAGGAGCAGCTGAAGAAAGTCATCTTGCCGCA
GGTATTACTGGGCCTGCGTGATACCAGCGATTCCATTGTGGTAATTACTCTTCACAGTTT
AGCGGTGCTGGTCTCTTTACTTGGACCAGAGGTGGTTGTTGGAGGAGAAAGAAGCAAGAT
CTTCAAACGCACTGCCCCAAGTTTTACTAAAACTATGGACCTTTCCCCAGAAGATTCTCC
CATGCATGTCACCTGCAGCCAGCACAGTCAGATCGCGCCAGTCTTGAAGAAGCCCTCCTC
TGGCATATTTCCTAAATGTCTCTCTTCCGGCAACATGCCCATCAACAGCAAGAAGCACAC
ACAGCGAGGTTACTACAGTACTCTTTTACAGACAGGTGATCAATTTTCTCAGCCTATGAA
ATTTCCCATCAATGGAATCTCAGATGTGAAAATTACCTTGGGGGACAGTGACAAGTTCCC
ATCAAGTTCTAAAAAGTCTGAGGAGTGGCCTGACTGGAGTGAGCCTGAGGAGACCGAGAA
CAAAACTGTCAGCATAGAGATTTGTCCCACGGAACCCTACGCTGCTGCCAGGGCCCCACT
CACCAACCTGAATGCAGAGGAGGAGAGGTGGGATGACTTTAAGCCCAGCAGCTTAGATGC
TGAAATAAACCTAGAAGGTGGAATCACGGCTGCAAGACCTGTTACCTCAGGGGAACAAAA
GGCCATTCCTGCTTTGCTTCCACTGACTCAAGAAGCCAAGCCTTCAAAATCAAGCCTGCC
CCCAAAGACCAGTCTTGCACAAAGCAGGGATGATGCAGACCAAACCAAGACAACGAAAGT
GTGGTCACAAGAAAGGCAGCTTAAGGTTCCATCACAACTTGGTTTAGGAGAGGAGTTTAC
CATTCAGGTGAAAAAGAAGCCAGTAAAAGATCCTGAGTTGGACTGGTTTGCTGATATGAT
CCCAGAAATTAAACCTTCAGCTGCTATTCTTATTTTACCTGAAATAAGGACAGAAACAGT
GGTTCCCAACAAGGATAATGTCTCATCAGTGATGCACTTTTCCTCAAAATTTGCTGCAGC
AGAAATTAGTGAGGAGGAGTCTGCAGGCTGGGGAGAAGAAGGGGATCTGAACTGGGAAGA
CAATAACTGGTGACAACCAGTGTGAGTTATGCTTTAGGAAAAAGGATTCCTTAAAAAAAA
AAAAAAAAAAAAAAAAATCGAATACCTCAACAGCAGGCTCTACAGACAAGAAAACCCAAA
AGCATCCTGTTTTTCTCATACCGGGAGCTCTTTTTCCAGTCTGTGCCAACAGAAGTGTGA
GACCTGGAGTGCTGGCCCGGAGCCCTAGGTGGCGAAGAGGTTCACAGCCCTTCTCAGAGG
AAGAGCCTGTGCGTCTGACTGAGGCCAGTTTCTGTGACGAGCAAGTGGCTGTGGAAAGGA
TGAACTTACCGCTTTTTTACAGAACAATTCCGGAAGTAAAGAAAATAAATACAGAAATTC
AAGCTGATTAGCTTAATTTTGTGCCATTTCTTTGTCAGAAGAGTAAGCTCTATTATAAAA
TACAACTTGCTGAAAAAAATTTTAGCTATAAAATATATAAATGATTTTAAATTGCTAAGG
TTTCCTTAGGCAGCTTATTTATTTGTTTACAGATGTACTACCTGAGTGGCCCCATGGGAA
CCTGGGCAGTTGCTGACTGTTCCACCTGTTATTACCTTGTACCAAAGTTCTTAATGAGAA
ATACCCCCCACAATCCTGTTCTCTAAATGTCCAATAAAAACTATTTTCACTAGATTCAAA
TTTATAAAAGTTTTATGTGTTGGAAAATGTACAAACATAATTACATCAACACTTTGATTT
ACAAAATATACT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATTGAAGAGTGAAGAGGAAAAAACTGAATTTTTCAAATTCCTGCTGGACAGAGTCAGCTG
CTTGTCAGAGGAATTAATTGCTTCACGGTTGGTGCCTCTTCTGCTTAATCAGTTGGTGTT
TGCAGAGCCAGTAGCTGTTAAGAGTTTTCTTCCTTATCTCCTTGGCCCCAAAAAAGACAA
TGCTCGGGGAGAAACCCCCTGCCTGCTCTCACCAGCCCTGTTCCAGTCTCGGGTGATCCC
TGTGCTGCTCCAGTTGTTCGAGGTGCATGAGGAGCACGTGCGGATGGTGCTGCTGTCCCA
CCTGGAGGCCTATGTGGAGCATTTCACTCAGGAGCAGCTGAAGAAAGTCATCTTGCCGCA
GGTATTACTGGGCCTGCGTGATACCAGCGATTCCATTGTGGTAATTACTCTTCACAGTTT
AGCGGTGCTGGTCTCTTTACTTGGACCAGAGGTGGTTGTTGGAGGAGAAAGAAGCAAGAT
CTTCAAACGCACTGCCCCAAGTTTTACTAAAACTATGGACCTTTCCCCAGAAGATTCTCC
CATGCATGTCACCTGCAGCCAGCACAGTCAGATCGCGCCAGTCTTGAAGAAGCCCTCCTC
TGGCATATTTCCTAAATGTCTCTCTTCCGGCAACATGCCCATCAACAGCAAGAAGCACAC
ACAGCGAGGTTACTACAGTACTCTTTTACAGACAGGTGATCAATTTTCTCAGCCTATGAA
ATTTCCCATCAATGGAATCTCAGATGTGAAAATTACCTTGGGGGACAGTGACAAGTTCCC
ATCAAGTTCTAAAAAGTCTGAGGAGTGGCCTGACTGGAGTGAGCCTGAGGAGACCGAGAA
CAAAACTGTCAGCATAGAGATTTGTCCCACGGAACCCTACGCTGCTGCCAGGGCCCCACT
CACCAACCTGAATGCAGAGGAGGAGAGGTGGGATGACTTTAAGCCCAGCAGCTTAGATGC
TGAAATAAACCTAGAAGGTGGAATCACGGCTGCAAGACCTGTTACCTCAGGGGAACAAAA
GGCCATTCCTGCTTTGCTTCCACTGACTCAAGAAGCCAAGCCTTCAAAATCAAGCCTGCC
CCCAAAGACCAGTCTTGCACAAAGCAGGGATGATGCAGACCAAACCAAGACAACGAAAGT
GTGGTCACAAGAAAGGCAGCTTAAGGTTCCATCACAACTTGGTTTAGGAGAGGAGTTTAC
CATTCAGGTGAAAAAGAAGCCAGTAAAAGATCCTGAGTTGGACTGGTTTGCTGATATGAT
CCCAGAAATTAAACCTTCAGCTGCTATTCTTATTTTACCTGAAATAAGGACAGAAACAGT
GGTTCCCAACAAGGATAATGTCTCATCAGTGATGCACTTTTCCTCAAAATTTGCTGCAGC
AGAAATTAGTGAGGAGGAGTCTGCAGGCTGGGGAGAAGAAGGGGATCTGAACTGGGAAGA
CAATAACTGGTGACAACCAGTGTGAGTTATGCTTTAGGAAAAAGGATTCCTTAAAAAAAA
AAAAAAAAAAAAAAAAATCGAATACCTCAACAGCAGGCTCTACAGACAAGAAAACCCAAA
AGCATCCTGTTTTTCTCATACCGGGAGCTCTTTTTCCAGTCTGTGCCAACAGAAGTGTGA
GACCTGGAGTGCTGGCCCGGAGCCCTAGGTGGCGAAGAGGTTCACAGCCCTTCTCAGAGG
AAGAGCCTGTGCGTCTGACTGAGGCCAGTTTCTGTGACGAGCAAGTGGCTGTGGAAAGGA
TGAACTTACCGCTTTTTTACAGAACAATTCCGGAAGTAAAGAAAATAAATACAGAAATTC
AAGCTGATTAGCTTAATTTTGTGCCATTTCTTTGTCAGAAGAGTAAGCTCTATTATAAAA
TACAACTTGCTGAAAAAAATTTTAGCTATAAAATATATAAATGATTTTAAATTGCTAAGG
TTTCCTTAGGCAGCTTATTTATTTGTTTACAGATGTACTACCTGAGTGGCCCCATGGGAA
CCTGGGCAGTTGCTGACTGTTCCACCTGTTATTACCTTGTACCAAAGTTCTTAATGAGAA
ATACCCCCCACAATCCTGTTCTCTAAATGTCCAATAAAAACTATTTTCACTAGATTCAAA
TTTATAAAAGTTTTATGTGTTGGAAAATGTACAAACATAATTACATCAACACTTTGATTT
ACAAAATATACT
|
|
gi|55588734|ref|XP_513987.1| |
Protein identifier
|
gi|55588734|ref|XP_513987.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
174-364, gnl|bosTau2|chr16 (25748761-25748571) |
|
174-364, gnl|Hg17|chr1 (166563599-166563410) |
|
174-364, gnl|Mm7|chr1 (163909543-163909731) |
| |
|
532-705, gnl|bosTau2|chr16 (25681110-25680939) |
|
532-705, gnl|canFam2|chr7 (31760114-31759688) |
|
532-705, gnl|dasNov1|scaffold_5574 (49560-49151) |
|
532-705, gnl|echTel1|scaffold_157954 (5977-6568) |
|
532-705, gnl|hg17|chr1 (166556449-166556873) |
|
532-705, gnl|Hg17|chr1 (166556758-166556584) |
|
532-705, gnl|mm7|chr1 (163914201-163913867) |
|
532-705, gnl|Mm7|chr1 (163913947-163914111) |
|
532-705, gnl|oryCun1|scaffold_178539 (82308-82655) |
|
532-705, gnl|panTro1|chr1 (148824638-148825062) |
|
532-705, gnl|rheMac2|chr1 (199566133-199566558) |
|
532-705, gnl|rn3|chr13 (79722299-79721938) |
| |
|
1392-2172, gnl|bosTau2|chr16 (25679038-25678260) |
|
1392-2172, gnl|Hg17|chr1 (166554573-166553828) |
|
1392-2172, gnl|Mm7|chr1 (163916761-163917471) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
174-364, gnl|bosTau2|chr16 (25748761-25748571) |
|
174-364, gnl|Hg17|chr1 (166563599-166563410) |
|
174-364, gnl|Mm7|chr1 (163909543-163909731) |
| |
|
532-705, gnl|bosTau2|chr16 (25681110-25680939) |
|
532-705, gnl|canFam2|chr7 (31760114-31759688) |
|
532-705, gnl|dasNov1|scaffold_5574 (49560-49151) |
|
532-705, gnl|echTel1|scaffold_157954 (5977-6568) |
|
532-705, gnl|hg17|chr1 (166556449-166556873) |
|
532-705, gnl|Hg17|chr1 (166556758-166556584) |
|
532-705, gnl|mm7|chr1 (163914201-163913867) |
|
532-705, gnl|Mm7|chr1 (163913947-163914111) |
|
532-705, gnl|oryCun1|scaffold_178539 (82308-82655) |
|
532-705, gnl|panTro1|chr1 (148824638-148825062) |
|
532-705, gnl|rheMac2|chr1 (199566133-199566558) |
|
532-705, gnl|rn3|chr13 (79722299-79721938) |
| |
|
1392-2172, gnl|bosTau2|chr16 (25679038-25678260) |
|
1392-2172, gnl|Hg17|chr1 (166554573-166553828) |
|
1392-2172, gnl|Mm7|chr1 (163916761-163917471) |
|
thg (0.380373) |
|
rec (0.346141) |
|
spc (0.340097) |
|
csk (0.281492) |
|
tes (0.207814) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
sin (0.174948) |
|
nco (0.161734) |
|
lun (0.150489) |
|
isp (0.150376) |
|
lnt (0.142308) |
|
ste (0.135208) |
|
pla (0.133672) |
|
cov (0.132153) |
|
ebs (0.118301) |
|
jca (0.11396) |
|
cty (0.10408) |
|
thg (0.380373) |
|
rec (0.346141) |
|
spc (0.340097) |
|
csk (0.281492) |
|
tes (0.207814) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
sin (0.174948) |
|
nco (0.161734) |
|
lun (0.150489) |
|
isp (0.150376) |
|
lnt (0.142308) |
|
ste (0.135208) |
|
pla (0.133672) |
|
cov (0.132153) |
|
ebs (0.118301) |
|
jca (0.11396) |
|
cty (0.10408) |
