Non-Coding RNA Search

Ss1.1-Pig4-TMW8035J04.3

Sequence:


               
               GTTTTTTTTGGCCCAAAAGAATTGCTGAAAATAATTTTCAAGTTGAAAGACCTAGTTTTA
TCTTAGTTTGCTTTCTTTGTACAGACTTGCCAAGTGGTGACATTTAGCAATGCATTAGTA
TAAGCAATTATTACATCAGTGCTCAGATTAACAAGCATTTCTGCCCTGCCTGCAAACCCC
CAGGCACTTTTTTTCATGGCTCAAAATATGGTGCATCTTTATATAAACCATATGTTTATA
GGGTGCACCTAGAAGCAGTTGCCTACTGTGTGCCCATCAGCCACTCTTTGATTCATGCCA
ACTTGAAAACTCTCCAGTTTGTAAAAGTTCAGATTAATTTATTCAGCTTCATTTGGACTA
TTTTTTTCATACTTATCGTCTTCATTTCATCCCGATACCGCATAATATCTATTCTTGTCA
CCTTTTGGGGAGCAGTTGCATTTCTGGAGGTGATGAGACAGGGAAAGAATATTGGGAAGC
GCAAAGCCACGATTTTTAAATGTTCTTTGTCAAGCTTGTGATTGTGTTTGATCCCAAATC
AAGATGAATGTATGCAAATGGGATGTACATAAATTATTTTTGTCCATGCCTAGACTAGTG
CTACATAATGGTGTTTTGGTTTTTTTTTTTGTTTTTATTTCGTTTATTGACAAAATAATC
TCTTAATACTTTGAAATTAAGCACGTGAGATTTTATGTTTGAGAAATAAAGACACAGCAT
GTATTATGCACTTCATTTCTCTGCTGTGTGGAGAAAGCAATAAACATTATGAGAATGTTA
AACATTATGCAAAATTATACCTTAAAATATTTGTTTTAAAATTACTGTACCTAGTCTCTT
TTTTTTGCATTACTTTGTAACCTTTTTCTATGCAAAAGTCTACATACCACTAATTAAATG
AAGTCCTTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTTTTGGCCCAAAAGAATTGCTGAAAATAATTTTCAAGTTGAAAGACCTAGTTTTA
TCTTAGTTTGCTTTCTTTGTACAGACTTGCCAAGTGGTGACATTTAGCAATGCATTAGTA
TAAGCAATTATTACATCAGTGCTCAGATTAACAAGCATTTCTGCCCTGCCTGCAAACCCC
CAGGCACTTTTTTTCATGGCTCAAAATATGGTGCATCTTTATATAAACCATATGTTTATA
GGGTGCACCTAGAAGCAGTTGCCTACTGTGTGCCCATCAGCCACTCTTTGATTCATGCCA
ACTTGAAAACTCTCCAGTTTGTAAAAGTTCAGATTAATTTATTCAGCTTCATTTGGACTA
TTTTTTTCATACTTATCGTCTTCATTTCATCCCGATACCGCATAATATCTATTCTTGTCA
CCTTTTGGGGAGCAGTTGCATTTCTGGAGGTGATGAGACAGGGAAAGAATATTGGGAAGC
GCAAAGCCACGATTTTTAAATGTTCTTTGTCAAGCTTGTGATTGTGTTTGATCCCAAATC
AAGATGAATGTATGCAAATGGGATGTACATAAATTATTTTTGTCCATGCCTAGACTAGTG
CTACATAATGGTGTTTTGGTTTTTTTTTTTGTTTTTATTTCGTTTATTGACAAAATAATC
TCTTAATACTTTGAAATTAAGCACGTGAGATTTTATGTTTGAGAAATAAAGACACAGCAT
GTATTATGCACTTCATTTCTCTGCTGTGTGGAGAAAGCAATAAACATTATGAGAATGTTA
AACATTATGCAAAATTATACCTTAAAATATTTGTTTTAAAATTACTGTACCTAGTCTCTT
TTTTTTGCATTACTTTGTAACCTTTTTCTATGCAAAAGTCTACATACCACTAATTAAATG
AAGTCCTTTTTG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               161-316, - strand, RNAz p=0.899246
               

               
               357-472, + strand, RNAz p=0.622694
               

               
               641-747, - strand, RNAz p=0.863275

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-316, - strand, RNAz p=0.899246
               

               
               357-472, + strand, RNAz p=0.622694
               

               
               641-747, - strand, RNAz p=0.863275

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_012259, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_012259, +

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-912, gnl|bosTau2|chr9 (13051403-13050516)
               

               
               1-912, gnl|canFam2|chr1 (67698179-67699002)
               

               
               1-912, gnl|dasNov1|scaffold_30610 (8543-7740)
               

               
               1-912, gnl|echTel1|scaffold_311557 (528002-527193)
               

               
               1-912, gnl|galGal2|chr3 (58270697-58269908)
               

               
               1-912, gnl|hg17|chr6 (126123098-126123904)
               

               
               1-912, gnl|Hg17|chr6 (126123201-126124104)
               

               
               1-912, gnl|loxAfr1|scaffold_363 (6721-7525)
               

               
               1-912, gnl|mm7|chr10 (30613969-30613204)
               

               
               1-912, gnl|Mm7|chr10 (30613887-30613007)
               

               
               1-912, gnl|monDom2|scaffold_0 (88295010-88294134)
               

               
               1-912, gnl|oryCun1|scaffold_128798 (7290-6495)
               

               
               1-912, gnl|panTro1|chr5 (128642649-128643454)
               

               
               1-912, gnl|rheMac2|chr4 (138184605-138183805)
               

               
               1-912, gnl|rn3|chr1 (27517224-27517944)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-912, gnl|bosTau2|chr9 (13051403-13050516)
               

               
               1-912, gnl|canFam2|chr1 (67698179-67699002)
               

               
               1-912, gnl|dasNov1|scaffold_30610 (8543-7740)
               

               
               1-912, gnl|echTel1|scaffold_311557 (528002-527193)
               

               
               1-912, gnl|galGal2|chr3 (58270697-58269908)
               

               
               1-912, gnl|hg17|chr6 (126123098-126123904)
               

               
               1-912, gnl|Hg17|chr6 (126123201-126124104)
               

               
               1-912, gnl|loxAfr1|scaffold_363 (6721-7525)
               

               
               1-912, gnl|mm7|chr10 (30613969-30613204)
               

               
               1-912, gnl|Mm7|chr10 (30613887-30613007)
               

               
               1-912, gnl|monDom2|scaffold_0 (88295010-88294134)
               

               
               1-912, gnl|oryCun1|scaffold_128798 (7290-6495)
               

               
               1-912, gnl|panTro1|chr5 (128642649-128643454)
               

               
               1-912, gnl|rheMac2|chr4 (138184605-138183805)
               

               
               1-912, gnl|rn3|chr1 (27517224-27517944)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               aor (0.781097)
               

               
               gul (0.355177)
               

               
               ova (0.258264)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.781097)
               

               
               gul (0.355177)
               

               
               ova (0.258264)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	161-316, - strand, RNAz p=0.899246
	357-472, + strand, RNAz p=0.622694
	641-747, - strand, RNAz p=0.863275

	1-912, gnl\|bosTau2\|chr9 (13051403-13050516)
	1-912, gnl\|canFam2\|chr1 (67698179-67699002)
	1-912, gnl\|dasNov1\|scaffold_30610 (8543-7740)
	1-912, gnl\|echTel1\|scaffold_311557 (528002-527193)
	1-912, gnl\|galGal2\|chr3 (58270697-58269908)
	1-912, gnl\|hg17\|chr6 (126123098-126123904)
	1-912, gnl\|Hg17\|chr6 (126123201-126124104)
	1-912, gnl\|loxAfr1\|scaffold_363 (6721-7525)
	1-912, gnl\|mm7\|chr10 (30613969-30613204)
	1-912, gnl\|Mm7\|chr10 (30613887-30613007)
	1-912, gnl\|monDom2\|scaffold_0 (88295010-88294134)
	1-912, gnl\|oryCun1\|scaffold_128798 (7290-6495)
	1-912, gnl\|panTro1\|chr5 (128642649-128643454)
	1-912, gnl\|rheMac2\|chr4 (138184605-138183805)
	1-912, gnl\|rn3\|chr1 (27517224-27517944)

	aor (0.781097)
	gul (0.355177)
	ova (0.258264)
	ret (0.128733)
	tra (0.123092)
	jca (0.11396)
	spc (0.113366)
	nbm (0.0993246)