Non-Coding RNA Search

Ss1.1-Pig4-TMW8035J07.3

Sequence:


               
               ACCCCGCGGGGGACACTGCAGCCGGAGCCCGGGAGGGGCCGCGCCGCCACCGTCTGAACT
AGGATGTCCCGACATGAAGGTGTCAGCTGTGATGCATGTTTAAAAGGAAATTTTCGAGGT
CGCAGATATAAGTGCTTAATTTGCTACGATTACGATCTTTGTGCATCTTGTTATGAAAGT
GGTGCAACAACAACAAGGCATACAACTGACCACCCAATGCAGTGCATATTAACAAGGGTA
GATTTTGATTTGTACTATGGTGGGGAAGCTTTCTCTGTAGAGCAGCCACAGTCTTTTACT
TGTCCCTATTGTGGAAAAATGGGCTATACGGAGACATCTCTTCAAGAACATGTTACTTCT
GAACACGCGGAAACATCAACAGAAGTGATTTGTCCAATATGTGCAGCATTACCTGGAGGC
GATCCTAATCATGTCACGGATGACTTTGCAGCTCATCTTACACTTGAACACAGAGCCCCT
AGAGATTTAGATGAATCGAGTGGTGTTCGACATGTACGTAGAATGTTTCACCCCGGCCGA
GGATTAGGAGGTCCTCGTGCTCGTAGATCAAACATGCACTTTACTAGCAGTTCTACTGGT
GGACTTTCTTCTTCTCAGAGTTCATATTCTCCAAGCAATAGGGAAGCCATGGATCCTATA
GCTGAGCTTTTATCTCAGTTATCAGGAGTGAGACGTTCTGCAGGAGGACAGCTTAATTCC
TCTGGCCCTTCCGCTTCTCAGTTACAGCAACTGCAGATGCAGCTGCAGCTAGAACGGCAG
CATGCCCAGGCAGCACGGCAACAACTGGAGACTGCACGCAACGCAACCCGGCGTACTAAC
ACAAGCAGTGTCACCACTACAATCACACAATCCACAGCAACAACCAACACAGCTAACACA
GAAAGCAGTCAGCAAACTGTCCAGAATTCCCAGTTTCTTTTAACAAGGTTGAATGATCCT
AAAATGTCTGAAACAGAGCGCCAGTCCATGGAAAGTGAGCGTGCAGATCGCAGCCTGTTT
GTCCAAGAGCTCCTTCTGTCCACTTTAGTTCGAGAAGAGAGCTCGTCCTCAGACGAGGAT
GAACGGGGGGAGATGGCAGATTTTGGTGCTATGGGCTGTGTAGATATTATGCCTTTAGAT
GTTGCTTTAGAAAACCTAAATTTAAAAGAGAGTAATAAAGGAAATGAGCCTCCACCACCT
CCTCTTTGATGACATCCCACTTCGCAGACAATGTCCTCTGTGCTGTATTTGCCAATGAAA
GTGGACAACAACTATCTTGGGTTTGTTTGGTGATTGTAATTTCAGGTCTGTCACTCTTGT
TACATTGTGTACATTCAAAAGGAAGAGAGAAAATATATATGATAATCATTTCCACTTAAC
TAATTTTTACTTCTAGCAGGTAAATGTAGGTAGCAGTGCAGGGGTGAGCTCTGCTTCCTG
TACCTTGACATGCAAAAGGCTCTCCTAATACTCCACGTTCAAACTGAAGAGGAAAATTGA
AATCTCTAATGAAGCTGCTGTGTGTATTTATGAATATTAATGAATAAAAACTGCTTGGAT
GGTTTACCTTAACTACTGCATGAGGTTTTTTGCAGCGTGCATGAGTTTTAGTGACCTTGT
TATTTAAAAAATTAAATACAAGGAGTAAAACTTAAACAAAAATAAAAGCCCAAAGCTTTC
CCAAACATTATTCAATGGTTACGCAGCAAAAGAGTTACTTGACGAAGTAGCTTTTGAATA
ATGTCTGCCTGAATCACCTTTCTTTGTGTGCCTCCTACGCACAAGCCAGCTCTGCAGTGG
AACCTGGGGTCGCAGCCGGTGTCGTGCTCCGCCCTGTGTGACTGTCCTGTCGCCCTGTTA
GTCATCTTACCGTGTGGAGCTCAGCCTGTCTAACGCATCCATAGAAGATACACCAGTTCA
GCTACTGTGGGAATCTGCTGCAGGCGTCTGTGTGCCCTAAAAACAAATCCTGTTCTCTTT
GTTTCAAGTTTTTACTTTTTGTGGTTGTTTAAATTTTTTTCAATTGTTAAATATGTTTTA
TTCAGGTGTAGATGAATTTCATTTATTCACTGTTCAACAAAGTTAACCTGAATTATGTTG
TCTTTGTTTTTGAAAATCTCACATTCTCAATCATATTTTGCGTTATTTATGTATTTGCTT
CATAGTTTGCTGAGACAGATCAGTATCAGGGGAGCTTTGAGGATTTGCCTTCCCAGACTT
TGTCAATATATTACAACCAAATTCTTAATGCTGATTTAGCACCTTTTATTTATTGGGTTT
TTTTCCAGCATAAAAAGTAAAGCCTTTTAATTGAATCATGCCACCTATATGCCTATATTA
TTAATCCTATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCCGCGGGGGACACTGCAGCCGGAGCCCGGGAGGGGCCGCGCCGCCACCGTCTGAACT
AGGATGTCCCGACATGAAGGTGTCAGCTGTGATGCATGTTTAAAAGGAAATTTTCGAGGT
CGCAGATATAAGTGCTTAATTTGCTACGATTACGATCTTTGTGCATCTTGTTATGAAAGT
GGTGCAACAACAACAAGGCATACAACTGACCACCCAATGCAGTGCATATTAACAAGGGTA
GATTTTGATTTGTACTATGGTGGGGAAGCTTTCTCTGTAGAGCAGCCACAGTCTTTTACT
TGTCCCTATTGTGGAAAAATGGGCTATACGGAGACATCTCTTCAAGAACATGTTACTTCT
GAACACGCGGAAACATCAACAGAAGTGATTTGTCCAATATGTGCAGCATTACCTGGAGGC
GATCCTAATCATGTCACGGATGACTTTGCAGCTCATCTTACACTTGAACACAGAGCCCCT
AGAGATTTAGATGAATCGAGTGGTGTTCGACATGTACGTAGAATGTTTCACCCCGGCCGA
GGATTAGGAGGTCCTCGTGCTCGTAGATCAAACATGCACTTTACTAGCAGTTCTACTGGT
GGACTTTCTTCTTCTCAGAGTTCATATTCTCCAAGCAATAGGGAAGCCATGGATCCTATA
GCTGAGCTTTTATCTCAGTTATCAGGAGTGAGACGTTCTGCAGGAGGACAGCTTAATTCC
TCTGGCCCTTCCGCTTCTCAGTTACAGCAACTGCAGATGCAGCTGCAGCTAGAACGGCAG
CATGCCCAGGCAGCACGGCAACAACTGGAGACTGCACGCAACGCAACCCGGCGTACTAAC
ACAAGCAGTGTCACCACTACAATCACACAATCCACAGCAACAACCAACACAGCTAACACA
GAAAGCAGTCAGCAAACTGTCCAGAATTCCCAGTTTCTTTTAACAAGGTTGAATGATCCT
AAAATGTCTGAAACAGAGCGCCAGTCCATGGAAAGTGAGCGTGCAGATCGCAGCCTGTTT
GTCCAAGAGCTCCTTCTGTCCACTTTAGTTCGAGAAGAGAGCTCGTCCTCAGACGAGGAT
GAACGGGGGGAGATGGCAGATTTTGGTGCTATGGGCTGTGTAGATATTATGCCTTTAGAT
GTTGCTTTAGAAAACCTAAATTTAAAAGAGAGTAATAAAGGAAATGAGCCTCCACCACCT
CCTCTTTGATGACATCCCACTTCGCAGACAATGTCCTCTGTGCTGTATTTGCCAATGAAA
GTGGACAACAACTATCTTGGGTTTGTTTGGTGATTGTAATTTCAGGTCTGTCACTCTTGT
TACATTGTGTACATTCAAAAGGAAGAGAGAAAATATATATGATAATCATTTCCACTTAAC
TAATTTTTACTTCTAGCAGGTAAATGTAGGTAGCAGTGCAGGGGTGAGCTCTGCTTCCTG
TACCTTGACATGCAAAAGGCTCTCCTAATACTCCACGTTCAAACTGAAGAGGAAAATTGA
AATCTCTAATGAAGCTGCTGTGTGTATTTATGAATATTAATGAATAAAAACTGCTTGGAT
GGTTTACCTTAACTACTGCATGAGGTTTTTTGCAGCGTGCATGAGTTTTAGTGACCTTGT
TATTTAAAAAATTAAATACAAGGAGTAAAACTTAAACAAAAATAAAAGCCCAAAGCTTTC
CCAAACATTATTCAATGGTTACGCAGCAAAAGAGTTACTTGACGAAGTAGCTTTTGAATA
ATGTCTGCCTGAATCACCTTTCTTTGTGTGCCTCCTACGCACAAGCCAGCTCTGCAGTGG
AACCTGGGGTCGCAGCCGGTGTCGTGCTCCGCCCTGTGTGACTGTCCTGTCGCCCTGTTA
GTCATCTTACCGTGTGGAGCTCAGCCTGTCTAACGCATCCATAGAAGATACACCAGTTCA
GCTACTGTGGGAATCTGCTGCAGGCGTCTGTGTGCCCTAAAAACAAATCCTGTTCTCTTT
GTTTCAAGTTTTTACTTTTTGTGGTTGTTTAAATTTTTTTCAATTGTTAAATATGTTTTA
TTCAGGTGTAGATGAATTTCATTTATTCACTGTTCAACAAAGTTAACCTGAATTATGTTG
TCTTTGTTTTTGAAAATCTCACATTCTCAATCATATTTTGCGTTATTTATGTATTTGCTT
CATAGTTTGCTGAGACAGATCAGTATCAGGGGAGCTTTGAGGATTTGCCTTCCCAGACTT
TGTCAATATATTACAACCAAATTCTTAATGCTGATTTAGCACCTTTTATTTATTGGGTTT
TTTTCCAGCATAAAAAGTAAAGCCTTTTAATTGAATCATGCCACCTATATGCCTATATTA
TTAATCCTATGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BWK2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BWK2_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1027-1226, + strand, RNAz p=0.740409

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1027-1226, + strand, RNAz p=0.740409

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_020122, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_020122, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               760-1288, gnl|bosTau2|chr1 (21263400-21263906)
               

               
               760-1288, gnl|Hg17|chr2 (85188230-85192268)
               

               
               760-1288, gnl|Mm7|chr6 (72866355-72860723)
               


               
               1292-1569, gnl|bosTau2|chr1 (21264096-21264381)
               

               
               1292-1569, gnl|Hg17|chr2 (85192273-85192550)
               

               
               1292-1569, gnl|Mm7|chr6 (72860716-72860442)
               


               
               1395-1549, gnl|bosTau2|chr15 (40631413-40631562)
               

               
               1395-1549, gnl|Hg17|chr2 (85192378-85192530)
               

               
               1395-1549, gnl|Mm7|chr6 (72860613-72860462)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               760-1288, gnl|bosTau2|chr1 (21263400-21263906)
               

               
               760-1288, gnl|Hg17|chr2 (85188230-85192268)
               

               
               760-1288, gnl|Mm7|chr6 (72866355-72860723)
               


               
               1292-1569, gnl|bosTau2|chr1 (21264096-21264381)
               

               
               1292-1569, gnl|Hg17|chr2 (85192273-85192550)
               

               
               1292-1569, gnl|Mm7|chr6 (72860716-72860442)
               


               
               1395-1549, gnl|bosTau2|chr15 (40631413-40631562)
               

               
               1395-1549, gnl|Hg17|chr2 (85192378-85192530)
               

               
               1395-1549, gnl|Mm7|chr6 (72860613-72860462)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               tes (1.03907)
               

               
               ste (0.946458)
               

               
               cte (0.58548)
               

               
               mgp (0.461361)
               

               
               bfe (0.449573)
               

               
               sag (0.36543)
               

               
               isp (0.300752)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               spc (0.113366)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (1.03907)
               

               
               ste (0.946458)
               

               
               cte (0.58548)
               

               
               mgp (0.461361)
               

               
               bfe (0.449573)
               

               
               sag (0.36543)
               

               
               isp (0.300752)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               spc (0.113366)

	760-1288, gnl\|bosTau2\|chr1 (21263400-21263906)
	760-1288, gnl\|Hg17\|chr2 (85188230-85192268)
	760-1288, gnl\|Mm7\|chr6 (72866355-72860723)

	1292-1569, gnl\|bosTau2\|chr1 (21264096-21264381)
	1292-1569, gnl\|Hg17\|chr2 (85192273-85192550)
	1292-1569, gnl\|Mm7\|chr6 (72860716-72860442)

	1395-1549, gnl\|bosTau2\|chr15 (40631413-40631562)
	1395-1549, gnl\|Hg17\|chr2 (85192378-85192530)
	1395-1549, gnl\|Mm7\|chr6 (72860613-72860462)

	tes (1.03907)
	ste (0.946458)
	cte (0.58548)
	mgp (0.461361)
	bfe (0.449573)
	sag (0.36543)
	isp (0.300752)
	kid (0.259471)
	ret (0.257467)
	ecc (0.23007)
	fcc (0.197785)
	aor (0.195274)
	ldo (0.194005)
	mgm (0.180343)
	ill (0.175593)
	duo (0.172801)
	mga (0.160205)
	spl (0.143184)
	lyg (0.133103)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	tra (0.123092)
	pgl (0.118483)
	med (0.116252)
	spc (0.113366)