Non-Coding RNA Search

Ss1.1-Pig4-TMW8035J11.3

Sequence:


               
               GGCGGGGCTCGCCATGCTCCCCCTCCCCAGCCCCCGTAACGCAGCTTATTTAGTTTCCAC
CCACTCGCCCTGGCTTCCTCTCCCCTTCCTTGACATCTGCAGGGATGGCACACGGTGTTG
CTGAGAACTGCTGTCTTTGCCTCAGTCCTGACTTCCATGGGGGTGTGTCCACGAAGGCTG
ATGTTTGGTTTGGTCTTGGGGCGGAGGAGATCCAGCAGTTCTTTCTCACCCTGGGCTGGG
ACCTCTGTTCTCAGAGATTCTGGGCCACCGCGTGCCACCCGCCCTCGGGCACCCACCTCG
AAGGAGCTCCTGCTTCCTCGTGAGGCACTCGCGCTCCTTGTCACAGATCTCCCGCCTGTT
GTCGGCCGTGATCCTCTTCATCGCCAGCTCCAGGTCCTCCTTCTGCTTGGCTAGGAAGTC
CCGGTCCTGTTATGGTTAAGTATCGAAAGTTTCAGGTGCGTTTATTGCATTGAGGTTATT
TTTTTAGAGATTCATATTGAGATATTTACAGGTAAAATGATACGGTGTCTGCGATTTGAG
TCAAAATAACAGAGTGGGGAAGCGAGTGGCTAGGAGCTGATTGTTTCTGAGATCAGGTGA
CAGGTTTGTGGGAGTTCATTATCCTGATGTACCTATTTCTGCTTAGGTGTCTCATTTTCC
TTAATAAAGAGTAAAACATAAAATTTAAGCTTAAAAATTTTAGCTACTGTATAGGAAATA
GATAAGCAAGAGGGACCTACTGTATAATACAGGGAACTATAGTTAATATTTTGTAATAAT
TTACAAGGGAAAAATCCCCCAAAATGTTGTAATAATTTTTAAGGGAAAAGAATCCCCAAA
AGGAAAAAATACACACACACACATAAAACTGCATCACTCTGCTGTACACCTGAAACTAAC
ACACACTGTGACTGAACTCTATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGGGCTCGCCATGCTCCCCCTCCCCAGCCCCCGTAACGCAGCTTATTTAGTTTCCAC
CCACTCGCCCTGGCTTCCTCTCCCCTTCCTTGACATCTGCAGGGATGGCACACGGTGTTG
CTGAGAACTGCTGTCTTTGCCTCAGTCCTGACTTCCATGGGGGTGTGTCCACGAAGGCTG
ATGTTTGGTTTGGTCTTGGGGCGGAGGAGATCCAGCAGTTCTTTCTCACCCTGGGCTGGG
ACCTCTGTTCTCAGAGATTCTGGGCCACCGCGTGCCACCCGCCCTCGGGCACCCACCTCG
AAGGAGCTCCTGCTTCCTCGTGAGGCACTCGCGCTCCTTGTCACAGATCTCCCGCCTGTT
GTCGGCCGTGATCCTCTTCATCGCCAGCTCCAGGTCCTCCTTCTGCTTGGCTAGGAAGTC
CCGGTCCTGTTATGGTTAAGTATCGAAAGTTTCAGGTGCGTTTATTGCATTGAGGTTATT
TTTTTAGAGATTCATATTGAGATATTTACAGGTAAAATGATACGGTGTCTGCGATTTGAG
TCAAAATAACAGAGTGGGGAAGCGAGTGGCTAGGAGCTGATTGTTTCTGAGATCAGGTGA
CAGGTTTGTGGGAGTTCATTATCCTGATGTACCTATTTCTGCTTAGGTGTCTCATTTTCC
TTAATAAAGAGTAAAACATAAAATTTAAGCTTAAAAATTTTAGCTACTGTATAGGAAATA
GATAAGCAAGAGGGACCTACTGTATAATACAGGGAACTATAGTTAATATTTTGTAATAAT
TTACAAGGGAAAAATCCCCCAAAATGTTGTAATAATTTTTAAGGGAAAAGAATCCCCAAA
AGGAAAAAATACACACACACACATAAAACTGCATCACTCTGCTGTACACCTGAAACTAAC
ACACACTGTGACTGAACTCTATTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               232-345, + strand, RNAz p=0.947574

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               232-345, + strand, RNAz p=0.947574

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               52-476, gnl|bosTau2|chr20 (2822087-2822507)
               

               
               52-476, gnl|Hg17|chr5 (171420496-171420881)
               


               
               618-793, gnl|bosTau2|chr20 (2822844-2823014)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-476, gnl|bosTau2|chr20 (2822087-2822507)
               

               
               52-476, gnl|Hg17|chr5 (171420496-171420881)
               


               
               618-793, gnl|bosTau2|chr20 (2822844-2823014)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cki (0.165235)
               

               
               che (0.136314)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               che (0.136314)
               

               
               ecc (0.115035)

	52-476, gnl\|bosTau2\|chr20 (2822087-2822507)
	52-476, gnl\|Hg17\|chr5 (171420496-171420881)

	618-793, gnl\|bosTau2\|chr20 (2822844-2823014)