Ss1.1-Pig4-TMW8035J18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTTCTCAGAGAAGTTCCCCACCCTTTGGTCTGGCGCAAGGAGCACTTATGGAGTGACA AAGGGGAAAGTTTGCTTTGAGGCCAAGGTAACCCAGAATCTCCCAATGAAAGAAGGCTGC ACAGAGGTTTCTCTTCTTCGAGTTGGATGGTCTGTTGATTTTTCCCATCCGCAGCTTGGT GAGGACGAATTCTCTTATGGTTTCGATGGACGAGGACTCAAGGCAGAGAATGGGCAGTTT GAGGAATTTGGCCAGACTTTTGGGGAGAATGATGTCATTGGCTGCTTTGCTAATTTTGAA GCTGAAGAAGTAGAACTTTCCTTTTCCAAGAATGGAGAAGACCTAGGTGTGGCATTCCGT ATCAGCAAGGAATCCCTGGCAGACCGGGCCCTCCTACCCCATGTCCTCTGCAAAAATTGT GTTGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTCTTCCCACCACCAGAAGAGTTT GTGTTCATCCATGCTGTGCCTGTTGAGGAGCGCGTGCGCACTGCAGTCCCCCCCAAGACC ATAGAGGAGTGTGAGGTGATCCTGATGGTGGGACTCCCTGGCTCTGGAAAGACCCAGTGG GCACTGAAATACGCCAAGGAAAACGCTGAGAAAAGATACAATGTCCTGGGAGCTGAGACT GTGCTCAATCAAATGAGGATGAAGGGGCTCGAGGAGCCAGAGATGGACCCCAAAAGCCGA GACCTTTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCCCGG ACAAAGAGGAACTTCATTCTTGATCAGTGTAATGTGTACAACTCTGGCCAACGGCGGAAG CTATTGCTGTTCAAGACTTTCTCTCGGAAAGTGGTGGTGGTTGTCCCCAATGAGGAGGAT TGGAAGAAGAGGCTGGAGTTGAGGAAGGAAGTGGAAGGAGATGATGTGCCTGAGTCTATA ATGCTGGAGATGAAAGCCAACTTCTCTTTGCCTGAAAAATGCGACTATATGGATGAGGTG ACATACGGGGAGCTGGAGAAGGAGGAAGCTCAGCCCATTGTCACTAAGTACAAGGAGGAG GCAAGGAAGCTGCTGCCCCCCTCCGAGAAGCGGACAAACCGCCGAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTTCTCAGAGAAGTTCCCCACCCTTTGGTCTGGCGCAAGGAGCACTTATGGAGTGACA AAGGGGAAAGTTTGCTTTGAGGCCAAGGTAACCCAGAATCTCCCAATGAAAGAAGGCTGC ACAGAGGTTTCTCTTCTTCGAGTTGGATGGTCTGTTGATTTTTCCCATCCGCAGCTTGGT GAGGACGAATTCTCTTATGGTTTCGATGGACGAGGACTCAAGGCAGAGAATGGGCAGTTT GAGGAATTTGGCCAGACTTTTGGGGAGAATGATGTCATTGGCTGCTTTGCTAATTTTGAA GCTGAAGAAGTAGAACTTTCCTTTTCCAAGAATGGAGAAGACCTAGGTGTGGCATTCCGT ATCAGCAAGGAATCCCTGGCAGACCGGGCCCTCCTACCCCATGTCCTCTGCAAAAATTGT GTTGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTCTTCCCACCACCAGAAGAGTTT GTGTTCATCCATGCTGTGCCTGTTGAGGAGCGCGTGCGCACTGCAGTCCCCCCCAAGACC ATAGAGGAGTGTGAGGTGATCCTGATGGTGGGACTCCCTGGCTCTGGAAAGACCCAGTGG GCACTGAAATACGCCAAGGAAAACGCTGAGAAAAGATACAATGTCCTGGGAGCTGAGACT GTGCTCAATCAAATGAGGATGAAGGGGCTCGAGGAGCCAGAGATGGACCCCAAAAGCCGA GACCTTTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCCCGG ACAAAGAGGAACTTCATTCTTGATCAGTGTAATGTGTACAACTCTGGCCAACGGCGGAAG CTATTGCTGTTCAAGACTTTCTCTCGGAAAGTGGTGGTGGTTGTCCCCAATGAGGAGGAT TGGAAGAAGAGGCTGGAGTTGAGGAAGGAAGTGGAAGGAGATGATGTGCCTGAGTCTATA ATGCTGGAGATGAAAGCCAACTTCTCTTTGCCTGAAAAATGCGACTATATGGATGAGGTG ACATACGGGGAGCTGGAGAAGGAGGAAGCTCAGCCCATTGTCACTAAGTACAAGGAGGAG GCAAGGAAGCTGCTGCCCCCCTCCGAGAAGCGGACAAACCGCCGAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 806-924, + strand, RNAz p=0.90659 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 806-924, + strand, RNAz p=0.90659 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 175-291, gnl|bosTau2|chr29 (32142371-32142255) | |
| 175-291, gnl|Hg17|chr11 (62246765-62246649) | |
| 175-291, gnl|Mm7|chr19 (8504564-8504680) | |
| 292-515, gnl|bosTau2|chr16 (20526070-20525847) | |
| 292-515, gnl|canFam2|chr7 (38807543-38807711) | |
| 292-515, gnl|danRer3|chr20 (31830553-31830721) | |
| 292-515, gnl|dasNov1|scaffold_15498 (19884-19716) | |
| 292-515, gnl|echTel1|scaffold_297958 (12646-12814) | |
| 292-515, gnl|fr1|chrUn (182796325-182796157) | |
| 292-515, gnl|galGal2|chr3 (30969956-30969788) | |
| 292-515, gnl|hg17|chr1 (241347395-241347563) | |
| 292-515, gnl|Hg17|chr1 (241347617-241347394) | |
| 292-515, gnl|loxAfr1|scaffold_7523 (492-324) | |
| 292-515, gnl|mm7|chr1 (178312659-178312827) | |
| 292-515, gnl|Mm7|chr1 (178312881-178312658) | |
| 292-515, gnl|monDom2|scaffold_13 (38640951-38640783) | |
| 292-515, gnl|oryCun1|scaffold_133004 (5156-5322) | |
| 292-515, gnl|panTro1|chr1 (225359102-225359270) | |
| 292-515, gnl|rheMac2|chr1 (212208141-212207973) | |
| 292-515, gnl|rn3|chr13 (94171230-94171398) | |
| 292-515, gnl|tetNig1|chr14 (8980085-8980253) | |
| 292-515, gnl|xenTro1|scaffold_1030 (95351-95183) | |
| 554-682, gnl|bosTau2|chr29 (32141611-32141483) | |
| 554-682, gnl|canFam2|chr18 (56973900-56973746) | |
| 554-682, gnl|danRer3|chr18 (36925611-36925752) | |
| 554-682, gnl|dasNov1|scaffold_5984 (28871-28717) | |
| 554-682, gnl|echTel1|scaffold_297958 (12306-12434) | |
| 554-682, gnl|fr1|chrUn (97519475-97519338) | |
| 554-682, gnl|galGal2|chr3 (30970361-30970174) | |
| 554-682, gnl|hg17|chr11 (62245856-62246009) | |
| 554-682, gnl|Hg17|chr11 (62245992-62245864) | |
| 554-682, gnl|loxAfr1|scaffold_7523 (845-691) | |
| 554-682, gnl|mm7|chr19 (8505569-8505416) | |
| 554-682, gnl|Mm7|chr19 (8505431-8505559) | |
| 554-682, gnl|monDom2|scaffold_150 (944511-944665) | |
| 554-682, gnl|oryCun1|scaffold_205628 (77344-77197) | |
| 554-682, gnl|panTro1|chr9 (63242831-63242985) | |
| 554-682, gnl|rheMac2|chr14 (11363903-11363750) | |
| 554-682, gnl|rn3|chr1 (211651830-211651677) | |
| 554-682, gnl|tetNig1|chr16 (6163295-6163148) | |
| 554-682, gnl|xenTro1|scaffold_568 (140034-140199) | |
| 806-976, gnl|bosTau2|chr29 (32140463-32140293) | |
| 806-976, gnl|canFam2|chr18 (56975819-56975586) | |
| 806-976, gnl|danRer3|chr18 (36918396-36918607) | |
| 806-976, gnl|dasNov1|scaffold_5984 (30463-30231) | |
| 806-976, gnl|echTel1|scaffold_232788 (2499-2729) | |
| 806-976, gnl|fr1|chrUn (97522472-97522280) | |
| 806-976, gnl|galGal2|chr3 (30971427-30971223) | |
| 806-976, gnl|hg17|chr11 (62244067-62244301) | |
| 806-976, gnl|Hg17|chr11 (62244241-62244071) | |
| 806-976, gnl|loxAfr1|scaffold_7523 (2440-2204) | |
| 806-976, gnl|mm7|chr19 (8506975-8506747) | |
| 806-976, gnl|Mm7|chr19 (8506804-8506974) | |
| 806-976, gnl|monDom2|scaffold_150 (943788-943987) | |
| 806-976, gnl|oryCun1|scaffold_205628 (78513-78282) | |
| 806-976, gnl|panTro1|chr9 (63241056-63241290) | |
| 806-976, gnl|rheMac2|chr14 (11365688-11365454) | |
| 806-976, gnl|rn3|chr1 (211653149-211652921) | |
| 806-976, gnl|tetNig1|chr14 (8979337-8979508) | |
| 806-976, gnl|xenTro1|scaffold_568 (139291-139495) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 175-291, gnl|bosTau2|chr29 (32142371-32142255) | |
| 175-291, gnl|Hg17|chr11 (62246765-62246649) | |
| 175-291, gnl|Mm7|chr19 (8504564-8504680) | |
| 292-515, gnl|bosTau2|chr16 (20526070-20525847) | |
| 292-515, gnl|canFam2|chr7 (38807543-38807711) | |
| 292-515, gnl|danRer3|chr20 (31830553-31830721) | |
| 292-515, gnl|dasNov1|scaffold_15498 (19884-19716) | |
| 292-515, gnl|echTel1|scaffold_297958 (12646-12814) | |
| 292-515, gnl|fr1|chrUn (182796325-182796157) | |
| 292-515, gnl|galGal2|chr3 (30969956-30969788) | |
| 292-515, gnl|hg17|chr1 (241347395-241347563) | |
| 292-515, gnl|Hg17|chr1 (241347617-241347394) | |
| 292-515, gnl|loxAfr1|scaffold_7523 (492-324) | |
| 292-515, gnl|mm7|chr1 (178312659-178312827) | |
| 292-515, gnl|Mm7|chr1 (178312881-178312658) | |
| 292-515, gnl|monDom2|scaffold_13 (38640951-38640783) | |
| 292-515, gnl|oryCun1|scaffold_133004 (5156-5322) | |
| 292-515, gnl|panTro1|chr1 (225359102-225359270) | |
| 292-515, gnl|rheMac2|chr1 (212208141-212207973) | |
| 292-515, gnl|rn3|chr13 (94171230-94171398) | |
| 292-515, gnl|tetNig1|chr14 (8980085-8980253) | |
| 292-515, gnl|xenTro1|scaffold_1030 (95351-95183) | |
| 554-682, gnl|bosTau2|chr29 (32141611-32141483) | |
| 554-682, gnl|canFam2|chr18 (56973900-56973746) | |
| 554-682, gnl|danRer3|chr18 (36925611-36925752) | |
| 554-682, gnl|dasNov1|scaffold_5984 (28871-28717) | |
| 554-682, gnl|echTel1|scaffold_297958 (12306-12434) | |
| 554-682, gnl|fr1|chrUn (97519475-97519338) | |
| 554-682, gnl|galGal2|chr3 (30970361-30970174) | |
| 554-682, gnl|hg17|chr11 (62245856-62246009) | |
| 554-682, gnl|Hg17|chr11 (62245992-62245864) | |
| 554-682, gnl|loxAfr1|scaffold_7523 (845-691) | |
| 554-682, gnl|mm7|chr19 (8505569-8505416) | |
| 554-682, gnl|Mm7|chr19 (8505431-8505559) | |
| 554-682, gnl|monDom2|scaffold_150 (944511-944665) | |
| 554-682, gnl|oryCun1|scaffold_205628 (77344-77197) | |
| 554-682, gnl|panTro1|chr9 (63242831-63242985) | |
| 554-682, gnl|rheMac2|chr14 (11363903-11363750) | |
| 554-682, gnl|rn3|chr1 (211651830-211651677) | |
| 554-682, gnl|tetNig1|chr16 (6163295-6163148) | |
| 554-682, gnl|xenTro1|scaffold_568 (140034-140199) | |
| 806-976, gnl|bosTau2|chr29 (32140463-32140293) | |
| 806-976, gnl|canFam2|chr18 (56975819-56975586) | |
| 806-976, gnl|danRer3|chr18 (36918396-36918607) | |
| 806-976, gnl|dasNov1|scaffold_5984 (30463-30231) | |
| 806-976, gnl|echTel1|scaffold_232788 (2499-2729) | |
| 806-976, gnl|fr1|chrUn (97522472-97522280) | |
| 806-976, gnl|galGal2|chr3 (30971427-30971223) | |
| 806-976, gnl|hg17|chr11 (62244067-62244301) | |
| 806-976, gnl|Hg17|chr11 (62244241-62244071) | |
| 806-976, gnl|loxAfr1|scaffold_7523 (2440-2204) | |
| 806-976, gnl|mm7|chr19 (8506975-8506747) | |
| 806-976, gnl|Mm7|chr19 (8506804-8506974) | |
| 806-976, gnl|monDom2|scaffold_150 (943788-943987) | |
| 806-976, gnl|oryCun1|scaffold_205628 (78513-78282) | |
| 806-976, gnl|panTro1|chr9 (63241056-63241290) | |
| 806-976, gnl|rheMac2|chr14 (11365688-11365454) | |
| 806-976, gnl|rn3|chr1 (211653149-211652921) | |
| 806-976, gnl|tetNig1|chr14 (8979337-8979508) | |
| 806-976, gnl|xenTro1|scaffold_568 (139291-139495) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (0.177588) |